Plant FIBer expression Database

Lus10029451 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G01060 38 / 0.0002 MYB CPL3, ETC3 ENHANCER OF TRY AND CPC 3, CAPRICE-like MYB3 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005949
[exp]
61 / 1e-12 AT4G01060 91 / 2e-25 ENHANCER OF TRY AND CPC 3, CAPRICE-like MYB3 (.1.2.3)
Lus10006889
[exp]
61 / 3e-12 ND /
Lus10019595
[exp]
54 / 1e-09 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G096300
[exp]
39 / 0.0003 AT2G46410 114 / 1e-34 CAPRICE, Homeodomain-like superfamily protein (.1)
Potri.002G168900
[exp]
37 / 0.0007 AT5G53200 122 / 2e-37 TRIPTYCHON, Homeodomain-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10029451 pacid=23149363 polypeptide=Lus10029451 locus=Lus10029451.g ID=Lus10029451.BGIv1.0 annot-version=v1.0
ATGGAAGACAAGCTGGTTCGCCCGCGAAAGAACAAGGAAAGCTACGCAGCCGTGGCCCCACGTAAACCTGCAGCCGCCATGGCTTCTTGCTCTTGCTCCG
ATGATCAGGCTATATTATCTCCATCTCGTAAAGAATGGAAGTTGATAGAGATGTGTGAAGCAGAAGTGGATCGCATCCATAGAATGCACAAGCTTCTTGG
AGACAGGTATCATATGATGTTTAGAGATAAACCAAGACATGACGGGAAGGCCGGAACAACTCAAAGCGTTCAACTTGGGAAGAAAGCGTCACTGTTTAGT
ATTTTGAGCATAACTCATGGCTCCGACCCGAATCCTCAAGAGAAGAAAAGAAAAACCGGTGAAGACGACATGTTCTTCGTGGAAATCCCAATCTTCGACT
TGATGATTTTTCCTTCGCCAGCCGTGGTTGATCCTCTCGCTTCAATCGTCTCTCTGAAACTCTAG
AA sequence
>Lus10029451 pacid=23149363 polypeptide=Lus10029451 locus=Lus10029451.g ID=Lus10029451.BGIv1.0 annot-version=v1.0
MEDKLVRPRKNKESYAAVAPRKPAAAMASCSCSDDQAILSPSRKEWKLIEMCEAEVDRIHRMHKLLGDRYHMMFRDKPRHDGKAGTTQSVQLGKKASLFS
ILSITHGSDPNPQEKKRKTGEDDMFFVEIPIFDLMIFPSPAVVDPLASIVSLKL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10029451
[exp]
0 1
AT1G79690 ATNUDT3 nudix hydrolase homolog 3 (.1) Lus10041626
[exp]
1.0 0.9217
AT2G01770 ATVIT1, VIT1 vacuolar iron transporter 1 (.... Lus10001589
[exp]
4.5 0.8880
AT1G08510 FATB fatty acyl-ACP thioesterases B... Lus10000365
[exp]
13.2 0.8383
AT1G01490 Heavy metal transport/detoxifi... Lus10027523
[exp]
16.9 0.8848
AT2G41480 Peroxidase superfamily protein... Lus10020422
[exp]
28.0 0.8678
AT2G15490 UGT73B4 UDP-glycosyltransferase 73B4 (... Lus10014086
[exp]
33.0 0.8675
Lus10029825
[exp]
33.7 0.8315
AT5G46080 Protein kinase superfamily pro... Lus10015326
[exp]
36.6 0.8657
AT5G52430 hydroxyproline-rich glycoprote... Lus10032276
[exp]
45.7 0.8638
AT3G09110 Protein of unknown function (D... Lus10003166
[exp]
45.8 0.8187

Lus10029451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.