Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01070 554 / 0 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01420 521 / 0 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G01390 484 / 7e-169 UDP-Glycosyltransferase superfamily protein (.1) AT2G18570 341 / 1e-112 UDP-Glycosyltransferase superfamily protein (.1) AT3G50740 336 / 2e-110 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT5G26310 327 / 4e-107 UGT72E3 UDP-Glycosyltransferase superfamily protein (.1) AT5G66690 325 / 2e-106 UGT72E2 UDP-Glycosyltransferase superfamily protein (.1) AT4G36770 286 / 1e-91 UDP-Glycosyltransferase superfamily protein (.1) AT2G18560 277 / 5e-89 UDP-Glycosyltransferase superfamily protein (.1) AT3G16520 263 / 2e-82 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005950 [exp] 907 / 0 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029453 [exp] 499 / 8e-175 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 491 / 1e-171 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10039588 [exp] 426 / 4e-146 AT4G01070 419 / 2e-143 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001906 [exp] 393 / 6e-133 AT4G01070 431 / 1e-147 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10003900 [exp] 377 / 2e-126 AT4G01070 411 / 4e-140 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001905 [exp] 368 / 5e-123 AT1G01420 391 / 3e-132 UDP-glucosyl transferase 72B3 (.1) Lus10003944 [exp] 357 / 9e-119 AT4G01070 400 / 1e-135 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10041713 [exp] 352 / 9e-117 AT2G18570 415 / 3e-141 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G096100 [exp] 655 / 0 AT4G01070 610 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G168600 [exp] 629 / 0 AT4G01070 595 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096000 [exp] 531 / 0 AT4G01070 544 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.003G138200 [exp] 521 / 0 AT4G01070 539 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G041800 [exp] 407 / 2e-138 AT4G01070 390 / 9e-132 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.007G030500 [exp] 366 / 3e-122 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G030400 [exp] 363 / 2e-121 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1) Potri.007G030300 [exp] 345 / 2e-114 AT3G50740 496 / 1e-173 UDP-glucosyl transferase 72E1 (.1) Potri.007G029800 [exp] 340 / 2e-112 AT3G50740 478 / 3e-166 UDP-glucosyl transferase 72E1 (.1) Potri.014G041900 [exp] 333 / 3e-110 AT4G01070 295 / 2e-95 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10029452 pacid=23149375 polypeptide=Lus10029452 locus=Lus10029452.g ID=Lus10029452.BGIv1.0 annot-version=v1.0 ATGGCGGATAATACCCAAACTCCACACATCGCAATTCTCCCCAGCCCAGGCATGGGCCACCTGATCCCACTTGTCGAGCTCACCAAGCGCCTCGTCACTC GCCACAACCTGGCCGTCACCTTCATTATCCCCACCACCACCGACGCCCCTCCTTCCGCCGCCATGAAATCCGTCCTCGACTCCCTCCCTTCCGCCTCCGT CGACTCAATCTTTCTCCCGCCGGTCTCCCTCCACGACGTCGTCTTCAATTCCTCTGCCTCCGATGCCAAAATCGAAACCATCATCTCCCTCACCGTCGCC CGATCCCTCCCTTCCCTCCGCGACGCCTTCCGCTCCATCGCCACCTCCGGCCTCCGCCGTCTCTCCGCTCTCGTCGTCGACCTGTTCGGTACCGATGCCT TCGACGTCGCCGCCGAATTCGGCGCTGCTTCTTATATTTTCTATCCGTCCACCGCCATGGCGCTGTCTCTGTTCCTTTACTTGCCAAAATTGGACGCGGA GGTTACAGGGCCGTATTCGAATCTCGAGGAGCCAGTTCAAATACCCGGGTGCATACCCGTAAATGGAACGGATCTTCTCGACCCGGTTCAGGACCGGAAT AACGACGCCTACAGTTGGCTCCTCCACCATGCGAAACGGTACCGTTTGGCAGATGGCGTGATGGTCAACAGCTTCCCTGAGCTGGAGCCGGGGGCGATTA AATCGCTACAAAAAACAGAGGACCAGCTCGGGAGAAAACCTATGGTTTATCCGGTTGGACCGCTGGTCAACATGGATTCCCCAAAGAAAACCGGGTCCGA ATGTCTCGACTGGCTTGACGTTCAACCGAGCGGTTCCGTGTTATTCGTGTCGTTCGGGAGTGGCGGGACACTCTCGTACGATCAGATAAACGAGTTGGCA TTTGGTCTTGAGATGAGCGAGCAACGATTCATATGGGTGGTCCGTAGTCCCGACGATAAAACTGCAAACGCCTCATTCTTCACGGTCCAATCTCAAAATG ACCCGTTTTATTTCCTGCCCAATGGATTTCTGGACCGGACAAGAGGGCGAGGCCTCGTGGTGTCTTCATGGGCCCCACAAGCCCAAATCCTAAGCCACAG CTCGACCGGAGGGTTCTTGACCCATTGTGGATGGAACTCGACGTTAGAGAGTGTGGCGAATGGAGTCCCGCTTATCGTATGGCCGTTGTACGCAGAACAA AAGATGAATGCAATGATGTTAACTGAGGATATTAAAGTGGCACTGAGGCCCAAAAGGATGGGAAGCAGAGTAATAGGAAGGGAAGAGATAGGGAACGTGA TGAGGAGTTTAATGGAAGGCGAAGAAGGAAAGAAGGTTCGTTATCGAATGAAGGAATTGAAAGACGCTGCCAGAAAGGTTCTGAGCAAGGATGGTTCGTC TAGTAGGGCATTGTCTGAAGTGGTTCAAAAGTGGAAGGACCAAAAAGTGTAA
AA sequence Show only first row Show all	>Lus10029452 pacid=23149375 polypeptide=Lus10029452 locus=Lus10029452.g ID=Lus10029452.BGIv1.0 annot-version=v1.0 MADNTQTPHIAILPSPGMGHLIPLVELTKRLVTRHNLAVTFIIPTTTDAPPSAAMKSVLDSLPSASVDSIFLPPVSLHDVVFNSSASDAKIETIISLTVA RSLPSLRDAFRSIATSGLRRLSALVVDLFGTDAFDVAAEFGAASYIFYPSTAMALSLFLYLPKLDAEVTGPYSNLEEPVQIPGCIPVNGTDLLDPVQDRN NDAYSWLLHHAKRYRLADGVMVNSFPELEPGAIKSLQKTEDQLGRKPMVYPVGPLVNMDSPKKTGSECLDWLDVQPSGSVLFVSFGSGGTLSYDQINELA FGLEMSEQRFIWVVRSPDDKTANASFFTVQSQNDPFYFLPNGFLDRTRGRGLVVSSWAPQAQILSHSSTGGFLTHCGWNSTLESVANGVPLIVWPLYAEQ KMNAMMLTEDIKVALRPKRMGSRVIGREEIGNVMRSLMEGEEGKKVRYRMKELKDAARKVLSKDGSSSRALSEVVQKWKDQKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10029452 [exp]	0	1
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10009872 [exp]	4.9	0.9397
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031208 [exp]	5.1	0.9429
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10041267 [exp]	7.5	0.9398
AT2G46690			SAUR-like auxin-responsive pro...		Lus10010110 [exp]	8.5	0.9313
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025775 [exp]	8.6	0.9422
AT5G46600			Aluminium activated malate tra...		Lus10042571 [exp]	10.9	0.8885
AT3G52790			peptidoglycan-binding LysM dom...		Lus10031662 [exp]	11.5	0.9337
AT4G15760		MO1	monooxygenase 1 (.1.2)		Lus10028081 [exp]	14.4	0.9209
AT1G26140			unknown protein		Lus10035070 [exp]	14.9	0.8694
AT1G21550			Calcium-binding EF-hand family...		Lus10000972 [exp]	16.0	0.9176

Compare expression of checked genes

Lus10029452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.