Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01070 508 / 2e-178 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01420 495 / 3e-173 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G01390 450 / 1e-155 UDP-Glycosyltransferase superfamily protein (.1) AT3G50740 327 / 2e-107 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT2G18570 324 / 2e-106 UDP-Glycosyltransferase superfamily protein (.1) AT5G66690 315 / 2e-102 UGT72E2 UDP-Glycosyltransferase superfamily protein (.1) AT5G26310 311 / 2e-101 UGT72E3 UDP-Glycosyltransferase superfamily protein (.1) AT4G36770 277 / 4e-88 UDP-Glycosyltransferase superfamily protein (.1) AT3G16520 275 / 3e-87 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3) AT2G18560 265 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005951 [exp] 880 / 0 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029452 [exp] 514 / 2e-180 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005950 [exp] 508 / 4e-178 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10039588 [exp] 445 / 1e-153 AT4G01070 419 / 2e-143 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001906 [exp] 384 / 3e-129 AT4G01070 431 / 1e-147 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10003900 [exp] 372 / 1e-124 AT4G01070 411 / 4e-140 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001905 [exp] 365 / 3e-122 AT1G01420 391 / 3e-132 UDP-glucosyl transferase 72B3 (.1) Lus10041713 [exp] 353 / 2e-117 AT2G18570 415 / 3e-141 UDP-Glycosyltransferase superfamily protein (.1) Lus10003944 [exp] 345 / 3e-114 AT4G01070 400 / 1e-135 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G096100 [exp] 543 / 0 AT4G01070 610 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096000 [exp] 542 / 0 AT4G01070 544 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G168600 [exp] 520 / 0 AT4G01070 595 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.003G138200 [exp] 485 / 8e-169 AT4G01070 539 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G041800 [exp] 388 / 5e-131 AT4G01070 390 / 9e-132 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.007G030500 [exp] 364 / 1e-121 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G030400 [exp] 342 / 3e-113 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1) Potri.007G030300 [exp] 332 / 4e-109 AT3G50740 496 / 1e-173 UDP-glucosyl transferase 72E1 (.1) Potri.007G029800 [exp] 324 / 3e-106 AT3G50740 478 / 3e-166 UDP-glucosyl transferase 72E1 (.1) Potri.014G041900 [exp] 301 / 5e-98 AT4G01070 295 / 2e-95 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10029453 pacid=23149462 polypeptide=Lus10029453 locus=Lus10029453.g ID=Lus10029453.BGIv1.0 annot-version=v1.0 ATGTCGTCGTCGCAGCAGAAACCTCACGTAGTCATCTTCCCCTCTCCAGGAATGGGCCATCTCATCCCGTTGGTCGAGCTCTCCAAGAAGCTGGTCCTCA CCCACAACTTATCCGTTACAGTCATGATCCCATCCCTGGGCCCACCTTCCAAGGCTCAAGCCCAATTCCTTGATTCCCTCCCGTCCGGTTTGATCAACCA CATCGCTCTCCCTCCGGCTAACCGGGCCGATTTCCCGGTCGATGCTCAGGCCGAGACTTTACTCTGCCTCACCGTCGCCCACGCCATCCCTTCCCTTCGC GACGCATTCAAGTCGTTGGTTGAGAAGGGAAAGCGACCGGTGGCGCTGATCGTCGATCTGTTTTGTACGGATGCATTCGATGTCGCTAGTGAATTTGGAG TGCCTGGTTATGCAGCCATGCTCTCGAATGCAATGTCGATGTCGATGGTAGCTCACTTGCCTAAATTGGACGAGGAGGTGGTCGGAGAGTACACCGACAT GAAGGACCCAATTCTGTTTCCGGGTTGTCGGGTCGCTGTCCGTGGTACGGAGCTGCCTAGCCCAGCTTTGAACAGAAAGGACGACGGCTATAAATGGTTC CTTCACAATGCCAAGCAAATGGATTTGGCTGAAGGGGTTTTGATAAACAGTTTCACTGATTTGGAAGGAGAAACCATTCAATTCCTCCAGGAGAACATGA ACAAACCGATCTATCCGATTGGACCGATAATCCAATCAAGTGATGGTTCAATCTCCGATCCCAACGGTTGCATGAAGTGGCTAGACAACCAGCCATCCGG TTCGGTCACATTGGTTTCATTTGGGAGCGGTGGGACCCTCTCATCAGCCCAACTAACTGAACTGGCGCTCGGTTTGGAGGCTAGCCAAAAGAGGTTCATC TGGGTGGTGAGGAGTCCAAACGACGCCGCCTCCAATGCCTCGTATTTCAGCGGCAGGAGCAGTTCGAACCCATTCAATTTCCTGCCAGACGGGTTTGTGG ACCGGACCAAAGATCGCGGCCTAGTTGTCCCGTCATGGGCCCCACAAATGCAAGTGCTTAGTCACGTGGCGACAGGAGGGTTCATGAGCCACTGCGGATG GAACTCCACGTTGGAGAGCTTAGTGAATGGGGTGCCAATGATTGCTTGGCCGTTGTACGCTGAGCAGAAAATGAATGCCGTGTTACTAGAGAAGGACTTT GCAGTTGCGTTACGGCCAATTGCAAGGGAAGATGGGGTGATTGGAAGGGAAGAGATCGCAGAGGTTGTTAAGGAACTCATGGAAGGTGGTGAACAAGGGG CGGGTGTTCGGAAGAGGATGGAGAAGCTTAAAGTGGCGGCGGCCGAGGCCGTCGGCGATGAAGGGTCTTCTACAAAGTCTCTTGCAGAGTTGGTGGCTAA GTGGATAAAAGGCATAAATAGTTAG
AA sequence Show only first row Show all	>Lus10029453 pacid=23149462 polypeptide=Lus10029453 locus=Lus10029453.g ID=Lus10029453.BGIv1.0 annot-version=v1.0 MSSSQQKPHVVIFPSPGMGHLIPLVELSKKLVLTHNLSVTVMIPSLGPPSKAQAQFLDSLPSGLINHIALPPANRADFPVDAQAETLLCLTVAHAIPSLR DAFKSLVEKGKRPVALIVDLFCTDAFDVASEFGVPGYAAMLSNAMSMSMVAHLPKLDEEVVGEYTDMKDPILFPGCRVAVRGTELPSPALNRKDDGYKWF LHNAKQMDLAEGVLINSFTDLEGETIQFLQENMNKPIYPIGPIIQSSDGSISDPNGCMKWLDNQPSGSVTLVSFGSGGTLSSAQLTELALGLEASQKRFI WVVRSPNDAASNASYFSGRSSSNPFNFLPDGFVDRTKDRGLVVPSWAPQMQVLSHVATGGFMSHCGWNSTLESLVNGVPMIAWPLYAEQKMNAVLLEKDF AVALRPIAREDGVIGREEIAEVVKELMEGGEQGAGVRKRMEKLKVAAAEAVGDEGSSTKSLAELVAKWIKGINS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10029453 [exp]	0	1
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10032220 [exp]	6.0	0.9128
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10019989 [exp]	6.5	0.9111
AT2G35770		SCPL28	serine carboxypeptidase-like 2...		Lus10041412 [exp]	9.2	0.8457
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	10.5	0.9076
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10010874 [exp]	12.4	0.8657
AT1G78780			pathogenesis-related family pr...		Lus10028620 [exp]	18.2	0.8335
AT5G61820			unknown protein		Lus10003210 [exp]	18.5	0.8721
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10014831 [exp]	19.2	0.8830
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10016310 [exp]	19.5	0.8866
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10031609 [exp]	20.6	0.8489

Compare expression of checked genes

Lus10029453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.