Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01430 478 / 1e-167 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT4G01080 457 / 2e-159 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 (.1) AT4G11090 428 / 4e-148 TBL23 TRICHOME BIREFRINGENCE-LIKE 23 (.1) AT4G23790 426 / 3e-147 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 (.1) AT5G15890 347 / 5e-115 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT1G70230 340 / 4e-114 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT5G15900 322 / 1e-106 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT3G28150 313 / 2e-103 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) AT5G51640 257 / 1e-80 TBL17, YLS7 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) AT4G25360 235 / 6e-72 TBL18 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005952 [exp] 724 / 0 AT1G01430 464 / 5e-163 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10032367 [exp] 444 / 6e-154 AT4G11090 521 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10033950 [exp] 444 / 1e-153 AT4G11090 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10034087 [exp] 334 / 3e-111 AT5G15890 490 / 1e-172 TRICHOME BIREFRINGENCE-LIKE 21 (.1) Lus10003061 [exp] 333 / 4e-111 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10010704 [exp] 328 / 2e-108 AT1G70230 459 / 2e-160 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10029188 [exp] 325 / 2e-107 AT1G70230 461 / 5e-161 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10039438 [exp] 297 / 4e-97 AT3G28150 431 / 8e-150 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Lus10039476 [exp] 295 / 3e-96 AT3G28150 428 / 1e-148 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G168400 [exp] 578 / 0 AT1G01430 495 / 4e-174 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.014G095800 [exp] 561 / 0 AT1G01430 498 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.001G093800 [exp] 482 / 3e-169 AT4G11090 516 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.003G137800 [exp] 482 / 5e-169 AT4G11090 500 / 4e-176 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.004G105700 [exp] 348 / 9e-117 AT5G15900 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.008G146100 [exp] 344 / 3e-115 AT1G70230 494 / 2e-174 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Potri.010G095700 [exp] 333 / 3e-111 AT1G70230 481 / 2e-169 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Potri.017G073700 [exp] 312 / 4e-103 AT3G28150 442 / 3e-154 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Potri.017G110200 [exp] 311 / 2e-102 AT5G15900 419 / 2e-144 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105600 [exp] 310 / 3e-102 AT5G15900 411 / 5e-142 TRICHOME BIREFRINGENCE-LIKE 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10029454 pacid=23149354 polypeptide=Lus10029454 locus=Lus10029454.g ID=Lus10029454.BGIv1.0 annot-version=v1.0 ATGATGAAGAACAAGCCAACCCTTGTTTCGAAATCAAAAACATTCACCTTCTCCAAAAACAATCACTTCTTCCTCAAATTCGCAGCCTCCTTCCTCTTAA TTGCCCTCACTTGCCGCCTCTTATCCTCCGATTCATTCCTCCTCTCCTCTTCCTACTCCTCCGCCACTTCCACCGCAGTTGAGGAAGATTCAGACTCTAT TACCCTCCCTGAGTCCTCTACTGATACAAACCAAGAGAAGTGCGATTTGTTCGTCGGAGAATGGGTGCGGAACCCATCGGGTCCGTTCTACACGAACCGG AGTTGTCACGAGATACAAGATCATCAGAACTGCATGAGAAATGGACGGCCCGATTCAGAGTATCTCTACTGGAGATGGCGTCCCAGTGGCTGTGATTTGC CCAAGTTCAATCCGAGCAAGTTTCTCAAGCTGATGAGGAACAAGTCCATGGCGTTCATTGGAGATTCTATCTCGAGGAACCATGTTCAGTCCTTGCTCTG CATTCTCTCCCAGGTGGAAGATGGAGTGGAAGTGTACCGTGACAAAGAGGACAAATCCAAAAGATGGCTGTTCCGATCTCACAACTTCACCCTCTCCGTT ATCTGGTCTCCATTCTTGATCAAATCCGAGATCTTCGAGGACAACAACGGCATCTCCTCAAAAGAAATCCAGCTCCACCTCGACAAGCTCGATCCCAAAT GGACCGAGCAATACGAGAGCTTCGACTACGCGGTGATTGCAGCTGGGAAGTGGTTCCTGAAGACCGCAGTGTACCACGAAAACAACGAGGTCGCAGGGTG CCATTACTGCCCCGGGATGAACCTGACCGAGCTGGGGCACGACTACGCATACCGCAGAGCGATAGCCCTCGCTCTCAATTTTGCGGCCAAGCAAAGGGCG TCGCTGTTCTTGCGAACGACCACACCGGACCACTTCGAGAACGGAGAATGGTTCAGCGGAGGGACCTGCAATCGAACAGTACCGTTCAAACACGGCGAGG TCGATATCGGAGAATTGGATAGACAGATGAGAGACATTGAGCTGGAGGAATTCGAGAAGGCCACAGCTGGAGAATTGGGGAATCGAGCGGTTCTGAAGCT GCTAGATACAACAAGGCTATCAGTGTTGAGACCAGATGGACACCCTGGACCGTATATGCATTCTCAGCCTTTTGCAAACAAAGATGAGAAAGTTCAAAAT GATTGCTTGCATTGGTGCTTGCCAGGGCCTATAGATTCATGGAATGATTTGGTGATGCAGATGATTGTAAATGGCTACAGATGA
AA sequence Show only first row Show all	>Lus10029454 pacid=23149354 polypeptide=Lus10029454 locus=Lus10029454.g ID=Lus10029454.BGIv1.0 annot-version=v1.0 MMKNKPTLVSKSKTFTFSKNNHFFLKFAASFLLIALTCRLLSSDSFLLSSSYSSATSTAVEEDSDSITLPESSTDTNQEKCDLFVGEWVRNPSGPFYTNR SCHEIQDHQNCMRNGRPDSEYLYWRWRPSGCDLPKFNPSKFLKLMRNKSMAFIGDSISRNHVQSLLCILSQVEDGVEVYRDKEDKSKRWLFRSHNFTLSV IWSPFLIKSEIFEDNNGISSKEIQLHLDKLDPKWTEQYESFDYAVIAAGKWFLKTAVYHENNEVAGCHYCPGMNLTELGHDYAYRRAIALALNFAAKQRA SLFLRTTTPDHFENGEWFSGGTCNRTVPFKHGEVDIGELDRQMRDIELEEFEKATAGELGNRAVLKLLDTTRLSVLRPDGHPGPYMHSQPFANKDEKVQN DCLHWCLPGPIDSWNDLVMQMIVNGYR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10029454 [exp]	0	1
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10005952 [exp]	1.0	0.9217
AT3G53010			Domain of unknown function (DU...		Lus10001129 [exp]	2.0	0.9076
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023338 [exp]	5.7	0.8544
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007284 [exp]	5.9	0.8664
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10013318 [exp]	6.9	0.8623
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10025425 [exp]	12.2	0.8422
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10007457 [exp]	12.7	0.8438
AT3G03210			unknown protein		Lus10010965 [exp]	13.0	0.8556
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10015740 [exp]	14.8	0.8944
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10042185 [exp]	15.9	0.8585

Compare expression of checked genes

Lus10029454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.