Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02500 833 / 0 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G12580 818 / 0 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT3G09440 816 / 0 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02490 812 / 0 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT1G16030 767 / 0 HSP70B heat shock protein 70B (.1) AT1G56410 733 / 0 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G28540 565 / 0 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 563 / 0 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G09080 541 / 0 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT4G24280 363 / 5e-117 CPHSC70-1 chloroplast heat shock protein 70-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023418 [exp] 978 / 0 AT5G02500 1033 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025336 [exp] 956 / 0 AT5G02500 953 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10023423 [exp] 948 / 0 AT3G12580 1000 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10005953 [exp] 871 / 0 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10024407 [exp] 827 / 0 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025276 [exp] 823 / 0 AT5G02500 1233 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025333 [exp] 822 / 0 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10002319 [exp] 779 / 0 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10025354 [exp] 671 / 0 AT5G02500 799 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G054700 [exp] 839 / 0 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 838 / 0 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205700 [exp] 838 / 0 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 837 / 0 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054000 [exp] 836 / 0 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 828 / 0 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042600 [exp] 773 / 0 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042700 [exp] 747 / 0 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.003G184000 [exp] 703 / 0 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054900 [exp] 630 / 0 AT3G12580 947 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10029455 pacid=23149414 polypeptide=Lus10029455 locus=Lus10029455.g ID=Lus10029455.BGIv1.0 annot-version=v1.0 ATGGCGAAAGGTGAAGGTCCGGCAATCGGTATCGACCTCGGAACCACATACTCCTGCGTCGGAGTATGGCAACACGACAGGGTGGAGATCATAGCCAATG ATCAGGGTAACAGGACCACTCCGTCCTATGTTGCTTTCACTGACACCGAGCGTTTGATCGGCGACGCTGCTAAGAATCAGGTCGCCATGAACCCCACTAA CACCGTCTTTGCCTACTTCAACGACTCTCAGAGGCAAGCCACCAAGGATGCGGGAGTGATTGCTGGCCTCAATGTCATGCGTATCATCAATGAACCTACT GCTGCAGCTATAGCTTATGGACTCGACAAGAAGGCCACAAGCGTTGGGGAGAAGAATGTGTTGATCTTTGACCTTGGCGGTGGTACTTTTGATGTGTCGT TGCTTACAATTGAGGAAGGTATCTTCGAGGTGAAGGCTACTGCTGGAGACACTCACCTTGGCGGCGAGGACTTCGACAACCGATTGGTAAATCATTTCGT GCAGGAGTTTAAGAGGAAGAACAAGAAGGATATCAGTGGGAATCCCAGGGCTCTTAGAAGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACCCTGTCC TCCACGGCTCAGACCACAATCGAGATCGATTCTCTTTACGAGGGAATCGATTTCTACTCGACAATTACTCGTGCGAGATTCGAGGAGCTGAACATGGATC TTTTCAGGAAATGTATGGAGCCTGTGGAGAAGTGTTTGAGGGATGCAAAGATGGACAAAAGCACCGTCCATGATGTTGTGCTTGTTGGGGGATCCACTAG GATTCCCAAGGTTCAACAACTACTTCAGGACTTCTTCAACGGGAAGGAGCTTTGCAAGAGCATCAACCCTGACGAGGCAGTTGCGTACGGTGCAGCAGTT CAAGCAGCAATTTTGAGCGGCGAAGGCAATGAGAAAGTTCAAGATCTTCTGCTGTTGGATGTTACGCCTTTGTCTCTTGGACTCGAGACTGCTGGTGGTG TGATGACTGTCTTGATTCCGAGGAATACAACCATTCCTACCAAGAAAGAGCAAGTCTTTTCGACTTACTCCGACAACCAACCCGGTGTGCTGATCCAGGT CTACGAGGGGGAGAGAACGAGGACTAGAGACAACAACTTGCTTGGCAAGTTTGAGTTGTCCGGGATCCCGCCTGCACCAAGAGGCGTGCCTCAAATCACT GTGTGCTTTGACATTGATGCCAACGGTATCTTAAACGTGTCGGCCGAGGATAAGACCACTGGTCAGAAGAACAAGATCACGATTACAAACGACAAGGGTA GGTTGTCCAAGGAGGAGATTGAGAAGATGGTGGAAGAGGCAGAGAAGTACAAGTCTGAAGACGAGGAGCATAAAAAGAAGGTTGAGGCGAAGAACGCATT GGAGAATTATGCTTACAATATGAGGAACACTGTGAAAGATGAAAAGATCGCATCAAAGCTTGAACCAGAGGAGAAGAGCAAGATTGAAGATGCTATCGAG AAGGCAATCCAGTGGCTGGAGAACAACCAGCTAGCTGAGGCGGATGAGTTTGAAGACAAGATGAAGGAGCTGGAGGGAATCTGCAATCCTATTATTGCCA AGATATATGGTGGTGGTGCAGGAATGCCTGGTGGTGCTGGCATGGATGATGACGAGGTCCCGCCTGCCACTGGAGCTGGGGGCCCTAAGATTGAAGAAGG TGATTAA
AA sequence Show only first row Show all	>Lus10029455 pacid=23149414 polypeptide=Lus10029455 locus=Lus10029455.g ID=Lus10029455.BGIv1.0 annot-version=v1.0 MAKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFAYFNDSQRQATKDAGVIAGLNVMRIINEPT AAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLS STAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAV QAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQIT VCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVEEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDEKIASKLEPEEKSKIEDAIE KAIQWLENNQLAEADEFEDKMKELEGICNPIIAKIYGGGAGMPGGAGMDDDEVPPATGAGGPKIEEGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10029455 [exp]	0	1
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027517 [exp]	1.4	0.9814
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027518 [exp]	2.0	0.9798
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10005953 [exp]	2.8	0.9611
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10039281 [exp]	3.9	0.9727
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10025005 [exp]	4.5	0.9697
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Lus10031730 [exp]	5.0	0.9681
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Lus10037545 [exp]	5.3	0.9623
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10037357 [exp]	6.5	0.9634
AT5G35320			unknown protein		Lus10011963 [exp]	7.9	0.9373
AT3G12050			Aha1 domain-containing protein...		Lus10017240 [exp]	8.9	0.9488

Compare expression of checked genes

Lus10029455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.