Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17600 85 / 9e-21 RING/U-box superfamily protein (.1) AT5G10380 82 / 6e-20 ATRING1, RING1 RING/U-box superfamily protein (.1) AT3G18930 82 / 1e-19 RING/U-box superfamily protein (.1.2) AT4G17905 82 / 1e-19 ATL4H RING/U-box superfamily protein (.1) AT1G72200 82 / 2e-19 RING/U-box superfamily protein (.1) AT3G03550 80 / 6e-19 RING/U-box superfamily protein (.1) AT5G05810 79 / 1e-18 ATL43 RING/U-box superfamily protein (.1) AT2G35000 79 / 2e-18 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT2G27940 77 / 3e-18 RING/U-box superfamily protein (.1) AT1G04360 78 / 4e-18 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005954 [exp] 232 / 2e-77 AT3G04020 111 / 7e-28 unknown protein Lus10025338 [exp] 83 / 5e-21 AT4G17905 99 / 4e-25 RING/U-box superfamily protein (.1) Lus10012745 [exp] 84 / 3e-20 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10013618 [exp] 83 / 3e-20 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10024405 [exp] 80 / 9e-20 AT4G17905 95 / 9e-24 RING/U-box superfamily protein (.1) Lus10031515 [exp] 82 / 1e-19 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10023617 [exp] 81 / 2e-19 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10029794 [exp] 81 / 5e-19 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1) Lus10015901 [exp] 79 / 1e-18 AT1G72220 175 / 3e-51 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G206200 [exp] 148 / 6e-47 AT5G17600 91 / 6e-22 RING/U-box superfamily protein (.1) Potri.008G054200 [exp] 129 / 3e-39 AT1G20823 80 / 6e-19 RING/U-box superfamily protein (.1) Potri.006G144200 [exp] 90 / 8e-24 AT5G17600 90 / 3e-21 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 85 / 1e-20 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 84 / 2e-20 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.005G099000 [exp] 81 / 4e-20 AT1G20823 146 / 2e-44 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 83 / 5e-20 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 83 / 6e-20 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 83 / 8e-20 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.005G071300 [exp] 82 / 1e-19 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10029456 pacid=23149358 polypeptide=Lus10029456 locus=Lus10029456.g ID=Lus10029456.BGIv1.0 annot-version=v1.0 ATGGAGAGCTCGACGGCGGAGCTGATTCCGGCGTACAAGTTCTACAAGGGGATGGGGCTTATGAAGGAAGACGGCGGGACCTGCGCGATTTGTCTATGTG AGTTCGAGGAAGGGGAGGAGTTGAAGACTCTGCCGGAGTGTATGCACTCTTTCCACGTGGGATGTATCGATATGTGGCTCTACTCACATTCGAATTGTCC GATGTGCCGGACCGACGCTGCGCCGTCGCCTCAGGTATCTTTCCAGGCGGCCGACGTGATGGAGGTGGAACAGAGCCTGGGTGTTACGTTGCAGGGTATA ATTGTACATTCGCGGACCAACCAGTGA
AA sequence Show only first row Show all	>Lus10029456 pacid=23149358 polypeptide=Lus10029456 locus=Lus10029456.g ID=Lus10029456.BGIv1.0 annot-version=v1.0 MESSTAELIPAYKFYKGMGLMKEDGGTCAICLCEFEEGEELKTLPECMHSFHVGCIDMWLYSHSNCPMCRTDAAPSPQVSFQAADVMEVEQSLGVTLQGI IVHSRTNQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10380		ATRING1, RING1	RING/U-box superfamily protein...		Lus10029456 [exp]	0	1
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10009617 [exp]	12.9	0.7391
AT5G40960			Protein of unknown function (D...		Lus10032031 [exp]	14.7	0.6791
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10027584 [exp]	19.6	0.7208
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10025104 [exp]	25.7	0.7173
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10022760 [exp]	30.5	0.6833
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10005256 [exp]	31.4	0.6521
					Lus10034328 [exp]	35.4	0.6688
AT1G21850		SKS8	SKU5 similar 8 (.1)		Lus10022648 [exp]	44.3	0.6444
					Lus10022214 [exp]	45.8	0.6426
					Lus10022518 [exp]	48.3	0.6426

Compare expression of checked genes

Lus10029456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.