Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04020 114 / 9e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010236 [exp] 316 / 9e-107 ND / Lus10023023 [exp] 261 / 3e-85 ND / Lus10010237 [exp] 219 / 4e-69 ND / Lus10036254 [exp] 217 / 4e-69 ND 38 / 0.003 Lus10011088 [exp] 148 / 2e-42 ND / Lus10021572 [exp] 139 / 1e-38 ND / Lus10005954 [exp] 126 / 1e-32 AT3G04020 111 / 7e-28 unknown protein Lus10038081 [exp] 129 / 5e-32 AT2G26280 693 / 0.0 CTC-interacting domain 7 (.1) Lus10003484 [exp] 120 / 5e-32 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G205900 [exp] 169 / 4e-49 AT3G04020 321 / 6e-110 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029457 pacid=23149361 polypeptide=Lus10029457 locus=Lus10029457.g ID=Lus10029457.BGIv1.0 annot-version=v1.0 ATGAGGGCCAAGAAATCCGCCTTCTTGGCGCTTGCTGAAAAGTGCAAGAGTATACTTGCTTCAAACTGGCAAGCTACCCTCCATACAATCAAAGCAGATA CAAAGGGAAGCAAGGAGGACATTTTCACTTCGAAGGTGAAGTACATAATCAAGAAAGGAAGACCATTCATATGGGTACCCAAGAAAGATATGCATAACGT GTATTTGTCACCTACATGTACTATGGAGATATGTGATCTGACTATGAAGCCAAGGACATGGTGTGGAGAACGATTGGAGTTCGAATGGGAAGTCGAGAAA GAAAATGGCGCAGCAGAGGGACTGCACGCCGTGCAGTCCATGAAAATGTCAAGAAGAGGTCCCTTGGAGAAACACAGTTGGTCATTGGAAACCTTAAAAG AGATTATTGAGCATGAAGAGAGAGTGATTAGCGACGCAGGCTACACTGTATCTAGTGTCTTAAATTCTTCAAATTCTGTTGGTGCATCACGAAGTGAAAG CCTCAAGGAGCTATTGGATGAACACGATCAGTACCAGATCTATAAGTTCAGCATGAGTTCATGCGCGTACGTTGATGGCAATGGAGGCACGCATGAAGTT GATGCCGAAGATATTGAAAAGTCTAAACCAGATCCGTTGGGTGATGATACTTTGACTGCTGCCAATGCCTCATTCTGGCCTCGAGTGCGGAGAGATGCTA TACCATTTGCTGCTGGGAGGCTTAAGGCGACACTTTTCAGGAACCCTCTTCACAGATTCCTTCAGGGAGGGTTGGCTAGGACTATTACTGCTCGTCATGA GAGTCTTGGTCACATCCTAGCTCGAGACTTGTTCCTGATTCGGACGATGGTCGACGGTACACCGGCACATTTGGGCTATCTAGTGGCTCATCACTTGCAG CTAATGTGTACCCCGTCTTCCTCTGCTCTTCTTGGCGGTGCTTACATCGCTCCGGTGGCTAGATACTTGGGGCTACTACATTGGTTTAGAGACGTCCCGA CCTACCCGCCGATGATTATGGATTCTGCTTTGCTCGTCCGCATGAAGCTGCTTCGTGCAGTGCGTGGTTTAGGTGGTAGGGCCTACGAGGTGACTGCTGA TGCCCACATTCCAGGACATGATGTTGATGAGGAGGCGGAGTTGGATGCCATGGATGCACCTGTTTCTCCACCACATCTCGATGAGGATTTCTCTCTTTCA GATGCAGTGCGCCGTCTCACGGATCAGCAGGCACGGTGTTAG
AA sequence Show only first row Show all	>Lus10029457 pacid=23149361 polypeptide=Lus10029457 locus=Lus10029457.g ID=Lus10029457.BGIv1.0 annot-version=v1.0 MRAKKSAFLALAEKCKSILASNWQATLHTIKADTKGSKEDIFTSKVKYIIKKGRPFIWVPKKDMHNVYLSPTCTMEICDLTMKPRTWCGERLEFEWEVEK ENGAAEGLHAVQSMKMSRRGPLEKHSWSLETLKEIIEHEERVISDAGYTVSSVLNSSNSVGASRSESLKELLDEHDQYQIYKFSMSSCAYVDGNGGTHEV DAEDIEKSKPDPLGDDTLTAANASFWPRVRRDAIPFAAGRLKATLFRNPLHRFLQGGLARTITARHESLGHILARDLFLIRTMVDGTPAHLGYLVAHHLQ LMCTPSSSALLGGAYIAPVARYLGLLHWFRDVPTYPPMIMDSALLVRMKLLRAVRGLGGRAYEVTADAHIPGHDVDEEAELDAMDAPVSPPHLDEDFSLS DAVRRLTDQQARC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04020			unknown protein		Lus10029457 [exp]	0	1

Compare expression of checked genes

Lus10029457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.