Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39580 707 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005958 [exp] 2734 / 0 AT2G39580 565 / 1e-173 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G052500 [exp] 1298 / 0 AT2G39580 818 / 0.0 unknown protein Potri.010G208200 [exp] 1239 / 0 AT2G39580 834 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10650 [flax] [poplar] zf-C3H1 Putative zinc-finger domain
Representative CDS sequence Show only first row Show all	>Lus10029459 pacid=23149391 polypeptide=Lus10029459 locus=Lus10029459.g ID=Lus10029459.BGIv1.0 annot-version=v1.0 ATGGTGGGTCACGGCGTTGACGAGCTGAAAAAGTTGGCCCAGTTACCGGCGACTTCCAATCCCCCGGAATCGTCGATGAACCCTAACTCATCACAGCAGT TTGCGCCCGCGAACATCAGAGAAGATGGCGAACTCTCTTCTTCATCGGATGACGACGAAAATTGCACTTCCACGAAATTGGAGTCATCTGGTACTGATGA ACCTTCAGCACCACGTCAGCCGTGTTTGGTTGAGTCAACCAAGAAGTCTATGCAGCAGATACCAACAGTGAACGAAACTTGTACAGCTAGTCCTGTGAAC AATATTGAGTTATCAACCCATGCATCAGCACAAGCAAATAATGGCAAGAGTGCTGTGAAGAATAGGTTAGCAAGTAAATCATCTAATTCAGGACGGCAGG TTGCTTTAGCAGGCAATAACAATCTTGTGATAAGGTTCTCAGATGAGGATAGTGCCAGTGAATCTGAAGATTATACTCAAATGATGGATTTGAGATCTAA GATCAGGAAAACTGGACCAGATGGCAATAGAAAGTTGCTTTCTCATACATCAATACCCAAGACGTCGCAACATGCTGGAGCTAATGTTCGCAACATAATT CGCCGCAAACCAACTCTAAACCACACATATGTCTCACCAGTAAGCAATATCGTTAGAGGAATTAAATCTGGAGCTGGGACAGCACAGACTGGACAATCAT CACGGGGTAGAAGTTTCAGCAATAGCAACATAAGTACTCAAGGGAATACTTTTGAACTTGGCCTAGGCTTGAACCAAGCTAAACTTCATGACTTGAGACA GCAAATCGCTATGCGGGAAAAGGAAATGAAGCTCAAGGCAGATCAGCAAAATAAGCTTTCTGCTTTAGTTTCTGCAAGAGAAAACAGTGCTAAGAACTTG TTGAAGAATGCTCTCGGTAAGTCAAAGATATGTCCTGATGCTGAACAAAAGGAACCTGTCAGAAAACGGCCAAAAGTGAGTGGGTCCTTTTCTAATCAGC TAAAGGCAGATTCTCAACAAGTAAATGTGCCTCCGAAGTCTATTCAACCATCAAATGGGGAGAATGCTGGGGTTGAACGACATGACATTGTTAATTGCAG CAATAATAGCAGTCCCAAGAGAAGAACAGATTCAGATGTCGTCAAATCACTACAGCAACACGATGCGCAGCAGTTCATTTCATCAGCAAATCCAGCCAGT AACATCGGTAGCTTGCATGTAATGGCTAAAAACATTGGTGTACAGGAGAGTGTGGGTAATGATCATCTGCTTAAGATCACTCACCCCCTTGGTTCTTCAA AGATGGCGTTGAGTGAAAAACATATGTTCCACAAGCAAAGTGCTTCTGGTCACAACATTGTGTCCCCCGTTGTAGAAAACATGTCCCAGGAGTCTTTGAT AAATGCGAACTTCTCAAGCTATTTGGGAAATGTCTCGGACAACTGTAACAGAAACTTGTGCCGCTTAGTTGAAATGGAGGAGAAATTGGACAAGGAGTTG GAAGAAGCACAAGGACTGAGATATAGATGTGAAATTGAAGAAAGAAATGCACTCAGCGCTTATAGGAAAGCTCAAAGGGCCTTGATTGAGGCTACTGCTA GATGTACCGGACTTTATCGCAAAAGGGAATTGCATTCTGCCCAATTTGGATCACTGATCATGAATGATCCCAGTTTGTTATTGTCTGCTGGGGAGCATGA CCAACGTGGAATGGGTTCAAGTCCTGCACAAAAGGCATGTCAAAACATACTTCCAGTACCTTCATCAATTCATCAGAAGCAGCTGTCGGATGGGCAGAAT TTGAGGTCAGAACCTTGCAGTGAGCCAGAGTTAAGCACGTCGGAGCCACTGAATCATGACTTCGTGAACACTGCAAGTCGACGGAGCTCTCCTACAAAAG ATCCAAATGTTTCATCAGATGAAGATGAAGAGGTGTTTCCAACGGAGCATGACGTGGACCAATGCAGCAACATGCAACCAATATCACATACTTCCTGTGG ACAGCTAAATCATTTGGATCGTCCTTCAGATAAAGGCTTTTCCTTAAATCACTCTCAAGACCCATTGCTTCTTGAGGCATCGTTGAGGACTAAACTCTAT GCTCGGTACGGAGTGAGATCCTTACCAAAGACTACTGTGTCATCACATATAGAGTCTGCAGATGAAGTAGGAACCGAAAACGACAATGAGAGTGAAAGAA CTCAGATGAGCAACAGCAGTCTTCCTGTATCAGCTGCTGAAAGACGGCAAGAATGCAATCTCGAAGGCGAGGATAATCCCGAAAGAGCTATGTCAGAGCC ACCTGCCCATGACATGAACCTTGAAACTCATTCCACTACTAATTCTGGTCAAATAGAGTACACTAGCCGAGGCTATCAGTCGACTCCTAACATGTTGTCA ACCCCTACAGGATGGAGAAGTGTGTTCAAGCGTTTGAAAGTTATGTCCTCCATAGCTTTGTTACCTGTGAAAGATATAAACAATCAGCAAAGTGCCATGG AATTTAAGTATGTTGAAGATGATAATGATGTTGAATCTAGCGAAATACAGTACACCAATTTAACTGCAAGTTCAATGGAGGAAAGCGCCAAGGATATATG GGATATGGAAATTGGATCCTTTAGCAACAATGCTGCAGTTGATCCATTCTGGCCTCTTTGTATGTATGAACTTAGAGGAAAATGCAACAACAGTGATTGT CCCTGGCAACATGTTGCAGATTACTCTGGTGACATTAGAAAAAAGAATCAGCATGATGGTTCTCATGATCCTGATTGTTCACCTGGATTACGAAATGAAA GAACAACAGCCAAACATCCAATTAGTGATGGTATATTGTATTTGCCAACTTATTGGGTTGGTCCAGATCTCATTAAAGCTCGTACACATACATATGAACC CAGCGTAGCATGGAAACATGGAAAATGCTGGCGCTGGCAGAAAAGCTTCAGTGCTTACTTAGCTATCTCCAGTTTGCTCGTCAAAGATTTGCCTGCAAAT GAGCTTTTTTCATGTGGCAATGAAGGCCGAATTGAGGTGCACGGGAGTTGGAATGCACAGTTGTCTTGCTTCCCCAGTAGAACTGGCCTAGCGAATTATG AGAATCAAGTGATACCTAGTAGCATGCAAGCCCTGGAAATGTCCCTTGCCACTCTCTGCCAGGAGGTTAACAAAGTAGAGAATATGACGAAGTCTCTTTC TATGCTGTCAAGGGCTATTGAATCTGATCCTACATCTGAAGTCGTGTGGATAACGTATCTCCTCGTGTACTATAGTAACATCAAGTCAATTGAGAAGAAT GACATGTTCTCCTATGCGGTAAAATATAATGCTGGATCTTATGGACTTTGGCTCATGTACATCAACAGCAGAAAACATCTGAAGGATCGGTTATGTGCAT ATAATGAAGCAATCAAAGTGCTTTGCCAGATCGAGTTGACTCCTGAGAAAAAAGAAATGCACAGTGCATGCATCTTAGACCTGTTTTTGCAGATGCTGGA ATGTTTCTGCATGTCTGGAAATATTGATATGGCAGTGCAGAAAATATCTGGACTCTTCAGTTTGACAACTTACTCAGATGAGCCACATTCTGAGTTGCTC TCTGATATACTCAAATGCCTGACAATTTCTGACAAATATATGTTCTGGATTTGTTGTGTGTACTTAGTTATTTACAGGAAGTTGCCTGTTCCCGTGCTTC AGCAGTTTGAGTGTGAGAAAGATCTCTCTGCAATTGAATGGTCACCTGTTGATTTAAAGGGCGATGAGAAGCATAGAGCCGTCGGGCTAGTTGAAATGAT GTTAGATTCTGCACTGCAGTTGTTTTCCAACAAAGAATCACTGGAGAGTGAAGCCAACAATAGGGGAGCTCAGTGTTTTGCCCTCAATCACATACGGTGT ATGATGGCACTTGGTAGGTCGGAAGTTTGTTGCACATTACTGGAGAAATATTTGACTGTGCTTCCACAGTGCTTGGAGTTGGTCCTTGTAGCGGCAAGAA GCCAAGCTGCTGATGTAGATAGTGTAAGGTTCGATTGGTTCGAGAATGCCCTCACCAACTGGCCGAAAGAAGTGCCTGGAATCCTTGGTTTATGGAATCA GTATGTTGAATTTGCACTTGAGAGACGAGGACCTGATCTTGCTAAGGAACTGCTTGTTCGTTGGTTCAACTCCATCTCAGAACTTAGATATAGGGACAGC AGTCCAGTTGGATCGTTGGAGTTGGCATCAGCTTCAAATCCAGAATTTCTAATGCCCTATTCTAATCAAATGGACATAATGTTTGGATTCCTCAATCTCT GCCTCGCTAAAATGTTGCAAAATGATCGTACTGGGGCGCTTGTTGCCATCAACAGTGCTTTGAAGAATGCACCCCCATTCTTTTTTAACCATTGCTTGGT TGAGCATGCTACATTCTTGCTTAACTATGAAAATGGGCGAGCAAAGTATGCTCCTGTCAAGGAGCGGCTGAGGATTTTGAAAGGTTACTTGGATGATTCT AGAGCTTCGTTTGTATCTGAACCTTTGTCCAGGCGGTTCATCAAGAATCTTGGCAAGCCAAGAGTTGAGCAGCTTATCAGTAACATACTGAGTCCAGTCT CATCTGTGTTTTCGCCTGTGAATGTGGTACTCAAGGCTTGGTATGGTCCACCCCTTGTACCCGAAAACATAGGCCATGCAAAGGAATTAGTTGACTTTGT TGAAGCGATATTGGACATAGTGCCATCTAATTACCCATTGGCATTCTCTGTCTGTAAGCTGCTGAGAGCAGGCTTCTTCAGAATTTCAGATGGAATGTCA GAAAGTGTACTATTCTGGTCGAGCTCAATGTTGGCGGATACGATATTTCAAGCTGTCCCAGTGGCACCTGAACATGTTTGGGTTGAGGCGGGGGAGATAT TGTTGGAAACTAATGGGGCTGCTGATTTACTTTCAGAGAGGTTTTACAAGAGAGCTTTGTCAGTGTATCCATTTTCGAAGAAGCTTTGGTGTGGGTACAA GGACTTGGTGAAAGATAGAAAAGGAGGGAATGGTAGCACTCCTAGCAGTGTTGTGGATGAATTGGCTAGACGAAGAGGTATAGAACTGGGATGA
AA sequence Show only first row Show all	>Lus10029459 pacid=23149391 polypeptide=Lus10029459 locus=Lus10029459.g ID=Lus10029459.BGIv1.0 annot-version=v1.0 MVGHGVDELKKLAQLPATSNPPESSMNPNSSQQFAPANIREDGELSSSSDDDENCTSTKLESSGTDEPSAPRQPCLVESTKKSMQQIPTVNETCTASPVN NIELSTHASAQANNGKSAVKNRLASKSSNSGRQVALAGNNNLVIRFSDEDSASESEDYTQMMDLRSKIRKTGPDGNRKLLSHTSIPKTSQHAGANVRNII RRKPTLNHTYVSPVSNIVRGIKSGAGTAQTGQSSRGRSFSNSNISTQGNTFELGLGLNQAKLHDLRQQIAMREKEMKLKADQQNKLSALVSARENSAKNL LKNALGKSKICPDAEQKEPVRKRPKVSGSFSNQLKADSQQVNVPPKSIQPSNGENAGVERHDIVNCSNNSSPKRRTDSDVVKSLQQHDAQQFISSANPAS NIGSLHVMAKNIGVQESVGNDHLLKITHPLGSSKMALSEKHMFHKQSASGHNIVSPVVENMSQESLINANFSSYLGNVSDNCNRNLCRLVEMEEKLDKEL EEAQGLRYRCEIEERNALSAYRKAQRALIEATARCTGLYRKRELHSAQFGSLIMNDPSLLLSAGEHDQRGMGSSPAQKACQNILPVPSSIHQKQLSDGQN LRSEPCSEPELSTSEPLNHDFVNTASRRSSPTKDPNVSSDEDEEVFPTEHDVDQCSNMQPISHTSCGQLNHLDRPSDKGFSLNHSQDPLLLEASLRTKLY ARYGVRSLPKTTVSSHIESADEVGTENDNESERTQMSNSSLPVSAAERRQECNLEGEDNPERAMSEPPAHDMNLETHSTTNSGQIEYTSRGYQSTPNMLS TPTGWRSVFKRLKVMSSIALLPVKDINNQQSAMEFKYVEDDNDVESSEIQYTNLTASSMEESAKDIWDMEIGSFSNNAAVDPFWPLCMYELRGKCNNSDC PWQHVADYSGDIRKKNQHDGSHDPDCSPGLRNERTTAKHPISDGILYLPTYWVGPDLIKARTHTYEPSVAWKHGKCWRWQKSFSAYLAISSLLVKDLPAN ELFSCGNEGRIEVHGSWNAQLSCFPSRTGLANYENQVIPSSMQALEMSLATLCQEVNKVENMTKSLSMLSRAIESDPTSEVVWITYLLVYYSNIKSIEKN DMFSYAVKYNAGSYGLWLMYINSRKHLKDRLCAYNEAIKVLCQIELTPEKKEMHSACILDLFLQMLECFCMSGNIDMAVQKISGLFSLTTYSDEPHSELL SDILKCLTISDKYMFWICCVYLVIYRKLPVPVLQQFECEKDLSAIEWSPVDLKGDEKHRAVGLVEMMLDSALQLFSNKESLESEANNRGAQCFALNHIRC MMALGRSEVCCTLLEKYLTVLPQCLELVLVAARSQAADVDSVRFDWFENALTNWPKEVPGILGLWNQYVEFALERRGPDLAKELLVRWFNSISELRYRDS SPVGSLELASASNPEFLMPYSNQMDIMFGFLNLCLAKMLQNDRTGALVAINSALKNAPPFFFNHCLVEHATFLLNYENGRAKYAPVKERLRILKGYLDDS RASFVSEPLSRRFIKNLGKPRVEQLISNILSPVSSVFSPVNVVLKAWYGPPLVPENIGHAKELVDFVEAILDIVPSNYPLAFSVCKLLRAGFFRISDGMS ESVLFWSSSMLADTIFQAVPVAPEHVWVEAGEILLETNGAADLLSERFYKRALSVYPFSKKLWCGYKDLVKDRKGGNGSTPSSVVDELARRRGIELG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39580			unknown protein		Lus10029459 [exp]	0	1
AT1G76630			Tetratricopeptide repeat (TPR)...		Lus10025170 [exp]	3.0	0.8188
AT1G15240			Phox-associated domain;Phox-li...		Lus10035877 [exp]	4.0	0.8090
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Lus10010242 [exp]	5.0	0.7442
AT1G77800			PHD finger family protein (.1....		Lus10024778 [exp]	5.7	0.7790
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Lus10033086 [exp]	11.1	0.6853
AT5G38600			Proline-rich spliceosome-assoc...		Lus10003067 [exp]	11.6	0.6962
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Lus10014023 [exp]	13.1	0.7130
AT1G04790			RING/U-box superfamily protein...		Lus10023671 [exp]	13.2	0.7438
AT2G16460			Protein of unknown function (D...		Lus10042073 [exp]	15.9	0.7292
AT3G21290			dentin sialophosphoprotein-rel...		Lus10006871 [exp]	15.9	0.7398

Compare expression of checked genes

Lus10029459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.