Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31730 57 / 4e-10 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G20640 55 / 1e-08 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 52 / 3e-08 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G31050 52 / 1e-07 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G61660 52 / 1e-07 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G05170 51 / 2e-07 bHLH bHLH114 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19500 51 / 2e-07 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G21340 51 / 2e-07 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G27660 50 / 6e-07 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 48 / 2e-06 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005959 [exp] 325 / 5e-113 AT4G21340 80 / 2e-17 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023428 [exp] 95 / 2e-22 AT5G59890 244 / 4e-81 actin depolymerizing factor 4 (.1.2) Lus10025599 [exp] 59 / 7e-11 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10027064 [exp] 59 / 8e-11 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018400 [exp] 58 / 1e-09 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10007613 [exp] 57 / 2e-09 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10038550 [exp] 56 / 7e-09 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024071 [exp] 53 / 8e-09 AT2G31730 116 / 3e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10026589 [exp] 55 / 2e-08 AT3G19500 112 / 6e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G052000 [exp] 101 / 2e-25 AT1G27660 90 / 5e-20 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G208600 [exp] 74 / 2e-15 AT1G27660 90 / 3e-20 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G126800 [exp] 54 / 4e-09 AT1G05710 192 / 4e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.005G230800 [exp] 56 / 5e-09 AT1G27660 247 / 3e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G112000 [exp] 54 / 5e-09 AT1G05710 180 / 2e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.011G033000 [exp] 55 / 1e-08 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.010G098900 [exp] 55 / 1e-08 AT1G31050 209 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G029100 [exp] 55 / 1e-08 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.007G020200 [exp] 54 / 3e-08 AT1G27660 155 / 8e-43 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G032400 [exp] 54 / 3e-08 AT1G27660 234 / 3e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029460 pacid=23149382 polypeptide=Lus10029460 locus=Lus10029460.g ID=Lus10029460.BGIv1.0 annot-version=v1.0 ATGAGGGATTCTGTTATTCCACTTTCTTCATCGCATCTTTGTTACAACTTTGGGAGCAGTAGTAATGAAGCATTGGTGATGCCAAGTTTGGACACCTCAA TGCCAATGGACAACACCAGAATTCTGAACCTTGACAGCTTCTGTTGGGACTCCAGCAATTTCATTAACAGTTACGGTTCGCCTTTCGAGGTGCTCAGTAC TGGGTATGGATTGTATTCAAGGTGTGATACCTTTTCGAACCAGCTCAAGAATGTTTCTTTTCCTGCTCAGGCTCCGGTGGCAGATAATTATGTGAGGGCT GTGATTAGATTGATTGATCAAAGTTGTTCGCATGGTGGACAAGTGAGGAAACGAAGAATTGAAGTTAGCAGCAGAGAATGCAAGGGTGGGAAGAGGAAGA AATCCAGCAGCGTCACTACTTGTGAAAAGACACAGCAGTTTATCGGCATCCAAGAATTCAAGATTGAAGTGCCCGCAAGGAGGAAACAGAAGTTAAGCGA GAAAATCACAACGCTGCAGAAGTTGGTGTCCCCATATGGCAAGACTGATACTGCCTCGGTTCTACAAGAGGCTTCTCTTCACATCAAGCTCCTCCACAAA CAGCTCCAGCAGATGTTGAGCCAGAGTGCCTCCGCTGCTGATGATTTAGAGACAGGGCTGAGAAGTAGAGGGCTTTGCTTGCTTCCTTTGTGTTTAGCAA ACAAAGTAACGACAGATCCATGTACGTCCCTATCTGGAAGATGA
AA sequence Show only first row Show all	>Lus10029460 pacid=23149382 polypeptide=Lus10029460 locus=Lus10029460.g ID=Lus10029460.BGIv1.0 annot-version=v1.0 MRDSVIPLSSSHLCYNFGSSSNEALVMPSLDTSMPMDNTRILNLDSFCWDSSNFINSYGSPFEVLSTGYGLYSRCDTFSNQLKNVSFPAQAPVADNYVRA VIRLIDQSCSHGGQVRKRRIEVSSRECKGGKRKKSSSVTTCEKTQQFIGIQEFKIEVPARRKQKLSEKITTLQKLVSPYGKTDTASVLQEASLHIKLLHK QLQQMLSQSASAADDLETGLRSRGLCLLPLCLANKVTTDPCTSLSGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10029460 [exp]	0	1
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Lus10011710 [exp]	4.0	0.8293
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10029226 [exp]	4.7	0.8927
AT5G10530			Concanavalin A-like lectin pro...		Lus10029555 [exp]	7.3	0.8809
AT1G63320			Pentatricopeptide repeat (PPR)...		Lus10009331 [exp]	9.3	0.7800
AT5G65010		ASN2	asparagine synthetase 2 (.1.2)		Lus10031300 [exp]	13.6	0.8354
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Lus10028026 [exp]	17.1	0.8049
AT5G59790			Domain of unknown function (DU...		Lus10003286 [exp]	18.8	0.8621
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Lus10003458 [exp]	20.7	0.7484
AT1G47530			MATE efflux family protein (.1...		Lus10002367 [exp]	22.2	0.8247
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10008264 [exp]	24.7	0.8287

Compare expression of checked genes

Lus10029460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.