Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65750 1755 / 0 2-oxoglutarate dehydrogenase, E1 component (.1) AT3G55410 1754 / 0 2-oxoglutarate dehydrogenase, E1 component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015205 [exp] 1926 / 0 AT5G65750 1889 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10029463 [exp] 1511 / 0 AT5G65750 1641 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10005962 [exp] 1496 / 0 AT5G65750 1404 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10031476 [exp] 946 / 0 AT5G65750 856 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10005961 [exp] 496 / 9e-170 AT3G55410 498 / 9e-171 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10002678 [exp] 50 / 9e-06 AT1G01090 688 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209000 [exp] 1824 / 0 AT5G65750 1908 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Potri.008G051600 [exp] 1821 / 0 AT3G55410 1907 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF00676 [flax] [poplar] E1_dh Dehydrogenase E1 component CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain
Representative CDS sequence Show only first row Show all	>Lus10029462 pacid=23149424 polypeptide=Lus10029462 locus=Lus10029462.g ID=Lus10029462.BGIv1.0 annot-version=v1.0 ATGACGTGGTTTAGAGCTGGTTCTAGCATAGCAAAGCTTGCCGTTAGGAGGACTTTGTCTCAGGGTGGGTCTTACACGACCAGAACACGAGTGTTACCTG CTCAAAGTCGGTATTTTCATACCACTGTCTTTAGGCCAAAGGCACAGTCAGCACCTGTCCCCAGGCCTGTTCCTCTTTCTAAGCTCACTGATAGTTTCTT AGATGGAACTAGCAGTGTCTACTTAGAGGAGCTTCAACGTGCATGGGAAGCTGACCCCAATAGTGTGGATGAGTCATGGGACAACTTCTTCAGGAACTTT GTTGGTCAGGCTGCTACGTCTCCTGGCATTTCGGGTCAAACAATTCAGGAGAGTATGCGGTTGTTGCTTCTGGTTAGGGCATATCAGGTTAATGGCCACA TGAAAGCCAAGTTAGACCCTTTGGCCCTGGAAGAAAGAGAGGTCCCTGATGATCTAAACCCTGCTCTTTATGGCTTCTCAGAAGCAGATCTTGACAGGGA GTTCTTTTTAGGAGTTTGGAAGATGGCTGGTTTTTTATCTGAGAACCGCCCTGTACAGACCCTCAGGTCCATATTGACCAGGCTTGAGCAAGCTTATTGT GGGAGTATTGGATTTGAATACATGCACATTGCTGATAGGGAGAAATGCAACTGGCTAAGGGACAAGATTGAGACACCAACACCTATGCAATATAACCGTC AGCGCCGAGAGCCACGAGATTTGGGCTTGAAGAATGTCGTGAGAAAGCCTCTGCGCCAAATATTTAGTGAGTTCAGTGGTGGAACGAAGCCAGTAGATGA GGTTGGGCTCTACACAGGTACTGGTGATGTCAAGTATCACTTGGGAACCTCTTATGATCGTCCAACTAGAGGTGGAAAGAGAATACATTTGTCTTTGGTT GCTAATCCTAGTCATTTGGAAGCTGTGGATCCTGTTGTTGTTGGAAAGACTAGAGCTAAGCAGTATTTCTCAAATGATGCGGACAGGACAAAGAATATGG GAATATTGATTCATGGAGATGGTAGTTTTGCTGGACAGGGTGTGGTATATGAGACTCTGCATCTTAGTGCACTGCCAAATTATAGCACTGGTGGGACTAT CCATATTGTGGTGAACAACCAAGTGGCTTTCACGACAGATCCTATGTCAGGCAGATCTTCACAGTATTGTACTGATGTTGCCAAGGCCTTGAATGCGCCA ATCCTACATGTTAATGGAGACGATGTAGAGGCTGTCGTTCATGCTTGTGAACTTGCAGCTGAATGGCGTCAGACTTTTCACTCCGATGTCGTTGTAGATC TAGTTTGTTATCGCCGTTTTGGCCATAATGAGATTGATGAGCCATCTTTCACGCAGCCCAAGATGTATCAGGTCATTCGGAGTCATCCCTCTGCTCTTCA GATTTATCAGAACAAACTTCTAGAATCTGGGCAGGTCAATCAAGAGGATATTAGCAAGATAACTGAGAAGGTCAGCACAATCCTGAATGAAGAGTTTTTG GCCAGTAAAGATTACGTTCCTAAAAGGAGAGACTGGCTTGCTTCTCATTGGACTGGGTTCAAGTCACCTGAGCAGATTTCACGTATTAGAAATACCGGGG TGAAACCTGAGATCTTGAAGAATGTCGGTAAAGCAATCACTGCTCTTCCAGAGACTTTTAAGACTCACAGAGCTGTAAAGAAGGTATATGAGCAACGTGC ACAAATGATAGAAACAGGAGAAGGCATTGACTGGGCTGTTGCAGAAGCCCTTGCTTTTGCTACATTACTGGTAGAGGGAAACCATGTTCGGTTGAGTGGT CAGGATGTTGAGAGAGGTACATTTAGTCATCGTCATTCCGTGCTTCATGATCAAGAAACTGGCGACAAGTATTGCCCTCTCGACCATGTTGTTATGAACC AGGACGAGGAGATGTTCACTGTTAGTAACAGCTCTCTTTCCGAATTTGGTGTTCTTGGATTCGAGTTGGGTTATTCAATGGAAAGTCCAAACTCACTGGT CCTCTGGGAAGCCCAATTTGGTGATTTTTCCAACGGGGCTCAAGTGATATTTGATCAGTTCTTAAGCAGCGGTGAGTCTAAATGGCTTCGTCAAACTGGT CTTGTTGTGCTTCTTCCTCACGGATACGATGGCCAGGGTCCTGAACACTCAAGTGCTCGGTTAGAGCGCTTTCTACAGATGAGTGATGACAATCCTTACG TGATTCCTGAGATGGACTCGACTATGCGTAAACAAATTCAGGAATGCAATTGGCAGGTTGTGAATGTAACAACACCTGCAAATTACTTCCATGTTTTGAG GAGACAGATACACAGAGAGTTCCGTAAGCCTCTTATTGTGATGGCTCCCAAAAATCTACTTCGTCACAAGGAGTGCAAATCAAATCTCTCTGAGTTTGAC GATGTCCAAGGCCACCCTGGATTTGACAAGCAGGGTACACGATTTAAGCGCCTGATAAAAGATCAGAATGAACACTCTGATCTCGAGGAGGGCATCAGAC GACTCGTTCTCTGCTCCGGAAAGGTGTATTATGAGCTTGATGAGGAGCGGAAGAAGACAGGTGCAAAGGATGTTGCTATCTGTAGGGTGGAACAATTGTG TCCTTTCCCATACAATCTTGTCCAGCGTGAGCTGAAGCGATATCCAAATGCGGAAATTGTTTGGTGCCAGGAGGAGCCAATGAACATGGGCGCATACAAC TACGTAGCACCTCGACTTTGCACAGCCATGAAGTCACTAAGCAGAGGGACCATGGATGACATCAAGTACGTCGGTCGTGCTCCCTCAGCCGCAACAGCCA CTGGGTTCTACCAAGTCCACGGGAGGGAACAGTCCGAACTGGTGCACAGGGCAATCCAACCTGAACCAATCCAGTCTCCCGCTGAAACTGTCTAA
AA sequence Show only first row Show all	>Lus10029462 pacid=23149424 polypeptide=Lus10029462 locus=Lus10029462.g ID=Lus10029462.BGIv1.0 annot-version=v1.0 MTWFRAGSSIAKLAVRRTLSQGGSYTTRTRVLPAQSRYFHTTVFRPKAQSAPVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNF VGQAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLALEEREVPDDLNPALYGFSEADLDREFFLGVWKMAGFLSENRPVQTLRSILTRLEQAYC GSIGFEYMHIADREKCNWLRDKIETPTPMQYNRQRREPRDLGLKNVVRKPLRQIFSEFSGGTKPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLV ANPSHLEAVDPVVVGKTRAKQYFSNDADRTKNMGILIHGDGSFAGQGVVYETLHLSALPNYSTGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALNAP ILHVNGDDVEAVVHACELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRSHPSALQIYQNKLLESGQVNQEDISKITEKVSTILNEEFL ASKDYVPKRRDWLASHWTGFKSPEQISRIRNTGVKPEILKNVGKAITALPETFKTHRAVKKVYEQRAQMIETGEGIDWAVAEALAFATLLVEGNHVRLSG QDVERGTFSHRHSVLHDQETGDKYCPLDHVVMNQDEEMFTVSNSSLSEFGVLGFELGYSMESPNSLVLWEAQFGDFSNGAQVIFDQFLSSGESKWLRQTG LVVLLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTMRKQIQECNWQVVNVTTPANYFHVLRRQIHREFRKPLIVMAPKNLLRHKECKSNLSEFD DVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLVLCSGKVYYELDEERKKTGAKDVAICRVEQLCPFPYNLVQRELKRYPNAEIVWCQEEPMNMGAYN YVAPRLCTAMKSLSRGTMDDIKYVGRAPSAATATGFYQVHGREQSELVHRAIQPEPIQSPAETV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10029462 [exp]	0	1
AT3G55410			2-oxoglutarate dehydrogenase, ...		Lus10005961 [exp]	3.7	0.9023
AT5G49810		MMT	methionine S-methyltransferase...		Lus10042407 [exp]	6.5	0.8710
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10014927 [exp]	8.3	0.8503
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	9.4	0.8845
AT1G73180			Eukaryotic translation initiat...		Lus10004803 [exp]	10.2	0.8831
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10012507 [exp]	10.2	0.8838
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10009918 [exp]	11.5	0.8381
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Lus10027760 [exp]	13.4	0.8727
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10015337 [exp]	14.5	0.8715
AT2G46520			cellular apoptosis susceptibil...		Lus10030241 [exp]	15.1	0.8812

Compare expression of checked genes

Lus10029462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.