Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65750 1623 / 0 2-oxoglutarate dehydrogenase, E1 component (.1) AT3G55410 1605 / 0 2-oxoglutarate dehydrogenase, E1 component (.1) AT1G01090 44 / 0.0004 PDH-E1 ALPHA, PDH-E1ALPHA pyruvate dehydrogenase E1 alpha (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015205 [exp] 1644 / 0 AT5G65750 1889 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10029462 [exp] 1511 / 0 AT5G65750 1755 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10005962 [exp] 1303 / 0 AT5G65750 1404 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10031476 [exp] 806 / 0 AT5G65750 856 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10005961 [exp] 322 / 2e-102 AT3G55410 498 / 9e-171 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10002678 [exp] 45 / 0.0003 AT1G01090 688 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G051600 [exp] 1671 / 0 AT3G55410 1907 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Potri.010G209000 [exp] 1660 / 0 AT5G65750 1908 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Potri.002G179500 [exp] 45 / 0.0002 AT1G01090 672 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF00676 [flax] [poplar] E1_dh Dehydrogenase E1 component CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain
Representative CDS sequence Show only first row Show all	>Lus10029463 pacid=23149368 polypeptide=Lus10029463 locus=Lus10029463.g ID=Lus10029463.BGIv1.0 annot-version=v1.0 ATGATGTGGTTTAGAGCAGGATCTATAATGGCAACTAGGTTTGCCACTAGAAGAAGTATGTCTCACCTGAACAGATTAAGTAATGTCAGGGCAGTATTAC AAGCTAGTGATATTCACAGCACAATCTCAAAGCCAATATCAACGACATCTAACAGAACAACTGACAATTTCCTGGACTCATTAAACAGTGTTTACATTGA GGAGCTTCAGAAGTCATGGGAAGCTGACCCAAACAGTGTGGATGAGTCATGGGACAATTTCTTCAGAAATTTTGTGGGTCAGAGTCATGTTAAAGGAATG TCTGCATCATCATCATCATCATCATCAGGAGCAGGAGTTTCTGGACAGTCCATTCAAGAGAGCATGCGCTTGTTGTTGCTAGTCAAGGCTTATCAGGTCA ATGGCCATACGAAAGCAAAATTGGATCCTTTGAACTTGGATGAGAACAAGGATATACCTGAGGACTTGGACCCTGCATATCATGGATTTACAGAAGCTGA TCTTGATAGAGAGTTCTACTTAGGAGTGTGGAAAACATTTGGGTTCTTGTCCGATAATCGACCCGTGATGACCCTGAGATCGATAATGAACCGGTTGGAG CAGGCATACTGTGGGAGTATTGGGTATGAGTATATGCACATTGATGACAGCAGCAAGTGCAACTGGTTAAGGCACAAAATTGAGACACAAGAACATGTCA CGTACGACACGAAAAGGCGTAAGGTTCTTCTCGATAGACTTACGTGGAGCACACTGTTTGAGAATTTCTTGGCGGTTAAGAAGAAGGCAGAGAAAAGGTT TGGCCTTGAAGGTGGAGAGACTCTCATTCCAGGGATGAAGCAGATGTTTGATAGAGCTGCCGGTCTAGGTGTTGAAAACATAGTGGTCGGCATGCCTCAT AGAGGGAGACTCAATGTGCTAGGGAATGTTTTCAGGAAGCCACTTGCACAGATTTTCAGTGAGTTTGACAAAAAGGCAAAACATGTTGATGATGTTGGGC ACTACATGGGGACAGGTGATGTCAAGTACCATTTGGGAACTTCCTATGATAGGCCAACTAGAGGAGGAAATAGGATTCATTTGTCTCTCATGGCAAATCC AAGCCATTTGGAAGCTGTGGATCCAGTTGTTCTAGGGAAAACTAGAGGAAAGCAATACTACTTCAAGGATACTGATAGGACAAAGAATATGGGAGTTTTG ATCCATGGGGATGGTAGTTTTGCTGGTCAGGGTGTTGTTTATGAAACACTGCATCTTAGTGCACTCCCTAATTACTGCACTGGTGGGACTATACACGTTG TGGTGAATAACCAAGTTGCTTTTACTACTGATCCTAGGTCAGGTAGGTCTTCCCAGTACTGCACTGATGCTGCCAAGGCATTCAATGTCCCAATTTTTCA TGTCAATGGAGATGACATGGAGGCAGTGGCTCGTGTCTGCGAGCTCGCTGCTGAGTGGCGCCAGACTTTCCATGCTGATGTTGTGGTTGACATAATATGT TATCGTCGATTTGGTCATAACGAGGTTGATGAGCCATCATTCACACAGCCTAAGATGTACAAGGTCATTGATAAACATCCTTCATCTCTTGAGATATATC AAAAGAAGCTCATGGAATCTGGTGAAATCACACAAGAAGAAATTGATAGGATACAGAAAAAAGTTGATTCTATTCTGAATGAAGAATATTCCAATAGTAA AGACTATGTTTTGAAAAGAACAGACTGGCTTTCATCTCATTGGGCTGGCTTCAAGTCCCCGCAACAACTTTCTCGTATCAGAAACACTGGGGTGAACCCG GAGGTGTTAATGAATGTTGGTAGAGCAATCACATCCATTCCAGATGCCATCAAGGCTCACAAGCAAGTCAAAAGAATCTACCAAGACCGTGCTCGAATGA TCGAGAGTGGTGAAGGTATAGACTGGGCACTTGCAGAAGGACTTGCCTTTGGAACATTATTGGTTGAAGGAAATCATGTGAGATTGAGTGGCCAAGACGT TGAAAGAGGCACATTCAGTCATCGACACGCGGTACTTCATGATCAACAAACCTGGAAAGAGTACTGCCCGCTGGACAATATAATGCCAGGACAAGATGAG GAGATGTTTACTGTGAGCAACAGTTCACTTTCAGAGTTTGGTGTGCTTGGCTTTGAGATGGGCTACTCCATGGAGAACCCAAATGCTTTGGTAATGTGGG AAGCTCAATTTGGCGACTTCTCAAATGGAGCTCAAGTTATGTTTGATCAGTTCCTTAGTGCTGGCGAGTCGAAATGGCTTCGCCAGACTGGACTAGTTGT GCTCCTCCCCCATGGCTACGATGGGCAAGGCCCCGAACATTCCAGTGCTAGATTGGAACGTTTCTTAATGATGAGTGATGGGTACCCATATGTGATACCT GAAATGGAGCCAACACTTAGAAAGCAGATCCAAGAATGCAACTGGCAGGTTGTGAATGCTACCACTCCTGCTAATTACTTCCATCTTCTGCGTCGTCAGA TACACAGGGAATTCCGGAAGCCTCTGATCGTGATGTCTCCAAAGAACCTACTCCGACACAAGCTTTGCAAGTCGAACCTATCCGAATTCGATGATGTCCA AGGCCACGATGGGTTCGACAAGCAAGGAACCAGATTCAAGCGGCTGATTAAGGACCAGAATGCACATTCTGATCTAGAGGAAGGCATCCGAAGACTAGTT CTCTGCTCTGGAAAGGTATATTATGAGCTTGAAGAAGAGAGAGGAAGGGTTGAAGCAAAGGACATTGCAATCTGCAGGGTGGAACAACTGTGTCCTTTCC CATTTGACCTTGTCCAAAGAGAGCTAAGGCGTTATCCTAATGCAGAGGTAGTATGGTGCCAGGAAGAGCAGATGAACATGGGGGCTTATAGCTACATCTT GCCACGACTGGCGACCACCATGAAAGATATGGGGAGAGGATCGTACGACGACATCAAGTACGTCGGACGAGGGCCATCGGCTTCCACAGCCACTGGGTTC TATCAAGTTCACAGACAAGAACAGTCTGAGCTTGTTCAACGTGCCATGCAGCCTCATCCAATCCAATTTCCTTGA
AA sequence Show only first row Show all	>Lus10029463 pacid=23149368 polypeptide=Lus10029463 locus=Lus10029463.g ID=Lus10029463.BGIv1.0 annot-version=v1.0 MMWFRAGSIMATRFATRRSMSHLNRLSNVRAVLQASDIHSTISKPISTTSNRTTDNFLDSLNSVYIEELQKSWEADPNSVDESWDNFFRNFVGQSHVKGM SASSSSSSSGAGVSGQSIQESMRLLLLVKAYQVNGHTKAKLDPLNLDENKDIPEDLDPAYHGFTEADLDREFYLGVWKTFGFLSDNRPVMTLRSIMNRLE QAYCGSIGYEYMHIDDSSKCNWLRHKIETQEHVTYDTKRRKVLLDRLTWSTLFENFLAVKKKAEKRFGLEGGETLIPGMKQMFDRAAGLGVENIVVGMPH RGRLNVLGNVFRKPLAQIFSEFDKKAKHVDDVGHYMGTGDVKYHLGTSYDRPTRGGNRIHLSLMANPSHLEAVDPVVLGKTRGKQYYFKDTDRTKNMGVL IHGDGSFAGQGVVYETLHLSALPNYCTGGTIHVVVNNQVAFTTDPRSGRSSQYCTDAAKAFNVPIFHVNGDDMEAVARVCELAAEWRQTFHADVVVDIIC YRRFGHNEVDEPSFTQPKMYKVIDKHPSSLEIYQKKLMESGEITQEEIDRIQKKVDSILNEEYSNSKDYVLKRTDWLSSHWAGFKSPQQLSRIRNTGVNP EVLMNVGRAITSIPDAIKAHKQVKRIYQDRARMIESGEGIDWALAEGLAFGTLLVEGNHVRLSGQDVERGTFSHRHAVLHDQQTWKEYCPLDNIMPGQDE EMFTVSNSSLSEFGVLGFEMGYSMENPNALVMWEAQFGDFSNGAQVMFDQFLSAGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLMMSDGYPYVIP EMEPTLRKQIQECNWQVVNATTPANYFHLLRRQIHREFRKPLIVMSPKNLLRHKLCKSNLSEFDDVQGHDGFDKQGTRFKRLIKDQNAHSDLEEGIRRLV LCSGKVYYELEEERGRVEAKDIAICRVEQLCPFPFDLVQRELRRYPNAEVVWCQEEQMNMGAYSYILPRLATTMKDMGRGSYDDIKYVGRGPSASTATGF YQVHRQEQSELVQRAMQPHPIQFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10029463 [exp]	0	1
					Lus10008536 [exp]	2.8	0.7762
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Lus10017639 [exp]	3.3	0.7004
AT5G41720			unknown protein		Lus10006473 [exp]	4.5	0.7783
AT3G02645			Plant protein of unknown funct...		Lus10015084 [exp]	12.4	0.7137
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016209 [exp]	15.3	0.6427
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10023072 [exp]	16.7	0.6971
AT1G35710			Protein kinase family protein ...		Lus10002293 [exp]	17.3	0.6738
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10000492 [exp]	18.3	0.6217
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004549 [exp]	19.3	0.7189
AT2G04865			Aminotransferase-like, plant m...		Lus10003728 [exp]	21.4	0.7356

Compare expression of checked genes

Lus10029463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.