Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39510 428 / 7e-150 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 403 / 7e-140 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 323 / 6e-108 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 311 / 1e-103 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 308 / 3e-102 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 306 / 1e-101 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT2G37450 288 / 2e-95 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT2G40900 289 / 7e-95 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 284 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 271 / 2e-88 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005964 [exp] 707 / 0 AT2G39510 433 / 7e-152 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 536 / 0 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 536 / 0 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 508 / 0 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 505 / 4e-180 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040310 [exp] 429 / 7e-150 AT2G39510 430 / 1e-150 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023431 [exp] 423 / 1e-147 AT2G39510 425 / 8e-149 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 391 / 1e-134 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10025308 [exp] 391 / 9e-130 AT2G37460 487 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209200 [exp] 484 / 1e-171 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 462 / 3e-163 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 380 / 4e-131 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051400 [exp] 341 / 2e-115 AT5G13670 405 / 4e-141 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 329 / 1e-110 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 325 / 4e-109 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 320 / 6e-107 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 314 / 1e-104 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 312 / 2e-104 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.003G192500 [exp] 304 / 9e-101 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10029464 pacid=23149400 polypeptide=Lus10029464 locus=Lus10029464.g ID=Lus10029464.BGIv1.0 annot-version=v1.0 ATGGAGTGGTGGTCATCAAAATCCTTCAACCAAGCAAAGCCATACCTTGCAGTGATCTTCATGCAATTTGTGTCAGCAGGGAGTTCCATCATCTCAAAGT TTGCTCTCAACCAAGGAAAGAGCCAACATGTTTTTGTTGTCTATAGATATGCCATGGCCACTGCTGTTATCTCCCCCTTTGCCTTCTTTTTTGACAGGAA GGTAAGGCCAAAGATGACTTGGGGGATCTTCTTCAAGATAGCACTCCTTGCCTTATTGGAGCCAACCATTGATCAAAACTTGTACTACACTGCCATGAAG TATACAACAGCAACATTTGCAGCTTCAATGAACAGTATCCTCCCTGCATTTGCATTCCTCATGGCCTGGGGTTTGGGGCTTGAAAAAGTTGAGTTGAGGA AGTTTCAGAGTCAGGCAAAGATATTAGGAACGATTGTGACAGTGGGAGGTGCTATGTTGATGGCTGCAATTAAAGGGGCAAGGCTGGATTTACCATGGAC AAAAGGAATTGGTATTCATGCTGCAGCTGGTTCAGTGGTTGCAGTTGAACATCCAATCAAGGGTGCTCTAATGATAGGAATTGGATGCATTTGTTGGGCT GCTTTTGTCAATCTCCAGGCAATCACTCTGAAATCATACCCAGGGAAGCTGTCATTAACAGCACTGATATGCATGATGGGAACAATAGAGGGATCAGTTG TGGCTGTTGGAATGGAATGGGGGAACCCTTCTGCTTGGAGTATTGGTTTTGACACCAAGTTACTTGCTGCTTTTTATAGTGGGATAATGTCATCAGGAAT ATTGTACTCGGTACAAGGGGTGGTGATGGAGAGCAAAGGACCGGTTTTCGTAACAGCTTTCGGCCCTTTAAGCATGGTGATCGTGGCGATCTTGGGTTCG ATTTTACTGTCTGAGATTCTTTACATGGGAAGGGTAGTGGGAGCGATGGTGATAGTGACAGGATTGTATATGGTGTTATGGGGGAAGTCGAGAGATGAGA AAGTTATAAGCAATATAACATCAAATGATAAAGTGGCTAATCCCCCATTAGCTGGTAATGTGGAAGCCACCACGACGAATATCCAGATGAAAGAAAGCAA TGGTGGTAGTGGTGGGGAAGAAGAAGAGTTTGTTTCCATTGAGGTATCCAAAACCTGA
AA sequence Show only first row Show all	>Lus10029464 pacid=23149400 polypeptide=Lus10029464 locus=Lus10029464.g ID=Lus10029464.BGIv1.0 annot-version=v1.0 MEWWSSKSFNQAKPYLAVIFMQFVSAGSSIISKFALNQGKSQHVFVVYRYAMATAVISPFAFFFDRKVRPKMTWGIFFKIALLALLEPTIDQNLYYTAMK YTTATFAASMNSILPAFAFLMAWGLGLEKVELRKFQSQAKILGTIVTVGGAMLMAAIKGARLDLPWTKGIGIHAAAGSVVAVEHPIKGALMIGIGCICWA AFVNLQAITLKSYPGKLSLTALICMMGTIEGSVVAVGMEWGNPSAWSIGFDTKLLAAFYSGIMSSGILYSVQGVVMESKGPVFVTAFGPLSMVIVAILGS ILLSEILYMGRVVGAMVIVTGLYMVLWGKSRDEKVISNITSNDKVANPPLAGNVEATTTNIQMKESNGGSGGEEEEFVSIEVSKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10029464 [exp]	0	1
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10005965 [exp]	3.2	0.8283
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10041652 [exp]	3.5	0.7603
AT1G49230			RING/U-box superfamily protein...		Lus10006785 [exp]	7.6	0.8248
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Lus10018211 [exp]	12.7	0.8152
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10000705 [exp]	16.7	0.8029
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10017882 [exp]	21.2	0.7724
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10021025 [exp]	22.4	0.7253
AT2G25625			unknown protein		Lus10013129 [exp]	31.9	0.7922
AT1G20823			RING/U-box superfamily protein...		Lus10016040 [exp]	36.9	0.7715
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10037285 [exp]	38.7	0.7584

Compare expression of checked genes

Lus10029464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.