Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39510 451 / 4e-159 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 404 / 3e-140 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 348 / 2e-118 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 348 / 3e-118 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 340 / 4e-115 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 330 / 2e-111 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 322 / 4e-108 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08300 319 / 4e-107 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 316 / 2e-105 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37450 308 / 3e-103 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005965 [exp] 689 / 0 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 596 / 0 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 586 / 0 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005964 [exp] 511 / 0 AT2G39510 433 / 7e-152 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029464 [exp] 506 / 1e-180 AT2G39510 429 / 2e-150 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023431 [exp] 444 / 5e-156 AT2G39510 425 / 8e-149 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040310 [exp] 441 / 7e-155 AT2G39510 430 / 1e-150 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 409 / 4e-142 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10025308 [exp] 410 / 2e-137 AT2G37460 487 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209200 [exp] 511 / 0 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 498 / 2e-177 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 401 / 9e-140 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 368 / 5e-126 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 367 / 2e-125 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 355 / 6e-121 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051400 [exp] 353 / 1e-120 AT5G13670 405 / 4e-141 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 349 / 1e-118 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 343 / 7e-116 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 337 / 7e-114 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10029465 pacid=23149419 polypeptide=Lus10029465 locus=Lus10029465.g ID=Lus10029465.BGIv1.0 annot-version=v1.0 ATGGAGTCGTGTTGGTCATCAAAGTTATGTACTCAGGCAAAGCCATTTCTAGGTGTGATCTTCATACAATTTGGATATGCAGGAATGTCCATAATCTCAA ATTTGGCTCTCAACAAAGGAATGAGCCAACATGTTCTTGTTGTCTACAGACATGCCATAGCCACTGCTGTGATTGCTCCCTTTGCCTTAATCTTTGAAAG GAAGCTGAGGCCAAAGATGACTCTGGGGATCTTCTTCAAGATAGCACTCCTTGGCTTGTTAGAGCCAACAATAGACCAGAACTTGTACTATACTGGGATG AAGTACACATCAGCAACTTTTGCTTCTGCTATGTGCAACGTTCTCCCTGCCTTTGCATTTCTAATGGCTTGGGCTTTAAGGCTTGAGAAAGTAAACTTGA GGAAGACGCATAGCCAGGCAAAAGTATTGGGGACAATAGTGACTGTTTTGGGAGCCATGTTACTGACTTTGATCAAAGGTGCAAGGCTGGATCTGCCATG GACAAAAGGGATTCATGATGCTGTTGCTGCTGATTCTGTAGCTTCGGCTCAGAATCCTATTAAGGGTGCAGTTATGATCGCAGTTGGTTCGGTTTGCTGG TCTGGTTTTGTCATTCTTCAGGCAATCACTCTGAAATCATACCCAGCTGAGCTGTCCCTAACAGCTATGATATGCATGTGTGGAACAATTCAGGGCTCAG TTTTTGCCCTGGGGATGGAATGGGGGAATCCCTCAGCTTGGGTTCTTGGTTTCGACACCAATTTACTTGCTGCTGTTTATAGTGGAGTGATATGCTCGGG ACTATCGTACTATGTCCAAGGAGTGGTGATGCAGAGCAAGGGCCCGGTTTTCGTTACTGCTTTCGGCCCATTGAGCATGGTGATTATCACAATCATGGGT TCCATTTTCTTATCTGAGGTTCTCTACATGGGAAGAGTACTTGGAGCAGTGGTGATAGTGACAGGATTGTATATGGTTCTGTGGGGGAAGACCAAAGATG AGCAGCCTAACACTGGAAACGACAAGGTGGCTGATTTGCCAACAGCTGCTACTGCTGCTGCATCATCAGTGAACGTTGAGAAGACACAAGATGGGGGAGA TCAACTTGTTTCCCTTGAAGTTTCAAGGGAATGA
AA sequence Show only first row Show all	>Lus10029465 pacid=23149419 polypeptide=Lus10029465 locus=Lus10029465.g ID=Lus10029465.BGIv1.0 annot-version=v1.0 MESCWSSKLCTQAKPFLGVIFIQFGYAGMSIISNLALNKGMSQHVLVVYRHAIATAVIAPFALIFERKLRPKMTLGIFFKIALLGLLEPTIDQNLYYTGM KYTSATFASAMCNVLPAFAFLMAWALRLEKVNLRKTHSQAKVLGTIVTVLGAMLLTLIKGARLDLPWTKGIHDAVAADSVASAQNPIKGAVMIAVGSVCW SGFVILQAITLKSYPAELSLTAMICMCGTIQGSVFALGMEWGNPSAWVLGFDTNLLAAVYSGVICSGLSYYVQGVVMQSKGPVFVTAFGPLSMVIITIMG SIFLSEVLYMGRVLGAVVIVTGLYMVLWGKTKDEQPNTGNDKVADLPTAATAAASSVNVEKTQDGGDQLVSLEVSRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10029465 [exp]	0	1
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10032335 [exp]	7.9	0.8024
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10024721 [exp]	20.8	0.7709
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Lus10026429 [exp]	20.8	0.7656
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10023947 [exp]	23.7	0.7708
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10009690 [exp]	33.0	0.7619
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Lus10016359 [exp]	40.0	0.7254
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10041535 [exp]	43.6	0.7285
AT3G03790			ankyrin repeat family protein ...		Lus10010659 [exp]	47.9	0.7549
AT5G57610			Protein kinase superfamily pro...		Lus10006977 [exp]	50.5	0.7269
AT4G35360			Uncharacterised conserved prot...		Lus10026563 [exp]	52.2	0.7128

Compare expression of checked genes

Lus10029465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.