Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20160 253 / 6e-78 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2) AT5G51750 228 / 4e-68 ATSBT1.3 subtilase 1.3 (.1) AT5G45650 228 / 4e-68 subtilase family protein (.1) AT1G20150 226 / 1e-67 Subtilisin-like serine endopeptidase family protein (.1) AT3G46850 222 / 3e-66 Subtilase family protein (.1) AT5G67360 222 / 4e-66 ARA12 Subtilase family protein (.1) AT5G59810 221 / 9e-66 ATSBT5.4 Subtilase family protein (.1) AT5G59100 218 / 2e-64 Subtilisin-like serine endopeptidase family protein (.1) AT5G03620 215 / 2e-63 Subtilisin-like serine endopeptidase family protein (.1) AT4G00230 214 / 3e-63 XSP1 xylem serine peptidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034544 [exp] 258 / 2e-79 AT1G20160 846 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Lus10016064 [exp] 234 / 5e-70 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10023048 [exp] 230 / 1e-68 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10032425 [exp] 223 / 2e-67 AT5G59810 607 / 0.0 Subtilase family protein (.1) Lus10020458 [exp] 226 / 5e-67 AT5G45650 940 / 0.0 subtilase family protein (.1) Lus10007083 [exp] 222 / 7e-66 AT5G45650 956 / 0.0 subtilase family protein (.1) Lus10019285 [exp] 216 / 7e-64 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10002964 [exp] 215 / 2e-63 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10014853 [exp] 207 / 2e-62 AT5G67360 806 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G189200 [exp] 436 / 1e-147 AT1G20160 583 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Potri.002G018600 [exp] 273 / 4e-85 AT1G20160 889 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Potri.005G243000 [exp] 258 / 2e-79 AT1G20160 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Potri.011G165900 [exp] 238 / 1e-71 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G469000 [exp] 237 / 1e-71 AT5G59810 754 / 0.0 Subtilase family protein (.1) Potri.001G468800 [exp] 232 / 1e-69 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.011G050000 [exp] 226 / 2e-67 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.012G131500 [exp] 225 / 4e-67 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.004G173900 [exp] 223 / 2e-66 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.001G468900 [exp] 223 / 3e-66 AT5G59810 730 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10029471 pacid=23149405 polypeptide=Lus10029471 locus=Lus10029471.g ID=Lus10029471.BGIv1.0 annot-version=v1.0 ATGAAGCTTCCTTCTTTCCATGCTTGGCTCCTAGTTTCTCGTATCAGTCATATATTCTTCAATCGGCTCCAGCTCCACTTTTCAGGCCGGATTTCTGCAA GATCCTATCGCCATCCTTTCCACGCCATGGAAAGGGGCATCTCCGTGGTCTGCTCTGCCGGAAACGACGGGCCTGACCTCAACACCGTCGTGAATACTGC ACCTTGGATATTCACCGCTGCGGCTTCCAATATTGATCACGATTTTCAGTCCGCTCTGATTCTTGGAAACAGCAAGACTTTCAAGGGTTCTGCCATTAAT TTTTTAAACCTTGGCGCCTCGAGGACTTACCCTTTAGTGTTTGGGGCGGAAGCTGCAACCAATTTCACCCCCGTCTCAGAATCAAGCAACTGCTATCCAG GATCACTTGACAGAAACAAAGTTGCTGGGAAGATTGTAGTTTGCGTGGCAAGTGACTTTAGCATCTCGAAGAAGATCAGGAAACTAGTGGTGCAAGATTG CAGAGCTAGAGGGATGATTCTGATCAATCCATTTGATTCAGGCACAGACGTCCCCTTTGATTCAGGCACATTCCCATTTGTAGAAATTGGGAGTCCCTAT GGGAATTCTATCCTCAAGTACATAAACACCACCAAGAACCCTAAGGCAACCATCCTAGCATCAGAGAACGTCCCGGGATATAGACCAGCTCCATCTGTTT CCTTTTTCTCTGCCAGAGGGCCTGGACCCCTTACAGAAAACATTCTCAAGCCAGACATAACGTCTCCAGGAGTATCCATTTTAGCTGCAATTACTCCTAA GAATGAAGTTGGAACCGTACCAGTTGGAAAGAAGCCGTCTGGATATGCTCTGAGATCGGGGACTTCCATGGCTTGCCCACATGTCACAGGTGCTGCTGCA TTCGTCAAATCCGTGCATCCCAAATGGAGCCCTTCCATGATCAAATCCGCACTCATGACAACCGCAACCATATACAACATGGGAAAACCTATGATGAACA GCTCAAGGCAACCAGCTAGCCCACTCGAGATGGGAGCTGGAGAAATCAACCCAATCAAAGCTCATTAA
AA sequence Show only first row Show all	>Lus10029471 pacid=23149405 polypeptide=Lus10029471 locus=Lus10029471.g ID=Lus10029471.BGIv1.0 annot-version=v1.0 MKLPSFHAWLLVSRISHIFFNRLQLHFSGRISARSYRHPFHAMERGISVVCSAGNDGPDLNTVVNTAPWIFTAAASNIDHDFQSALILGNSKTFKGSAIN FLNLGASRTYPLVFGAEAATNFTPVSESSNCYPGSLDRNKVAGKIVVCVASDFSISKKIRKLVVQDCRARGMILINPFDSGTDVPFDSGTFPFVEIGSPY GNSILKYINTTKNPKATILASENVPGYRPAPSVSFFSARGPGPLTENILKPDITSPGVSILAAITPKNEVGTVPVGKKPSGYALRSGTSMACPHVTGAAA FVKSVHPKWSPSMIKSALMTTATIYNMGKPMMNSSRQPASPLEMGAGEINPIKAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10029471 [exp]	0	1
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10032778 [exp]	2.4	0.8225
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10015664 [exp]	4.2	0.8121
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10037678 [exp]	4.2	0.8115
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10016026 [exp]	4.7	0.7616
					Lus10039517 [exp]	7.7	0.7627
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031798 [exp]	16.5	0.7634
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10018246 [exp]	16.5	0.7487
AT4G03020			transducin family protein / WD...		Lus10012779 [exp]	18.3	0.7578
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10032761 [exp]	18.4	0.7399
AT5G17570			TatD related DNase (.1)		Lus10017234 [exp]	23.6	0.7558

Compare expression of checked genes

Lus10029471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.