Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007416 [exp] 85 / 3e-18 ND / Lus10039535 [exp] 81 / 8e-17 ND / Lus10005309 [exp] 71 / 4e-14 ND / Lus10007415 [exp] 70 / 7e-13 ND / Lus10022968 [exp] 69 / 1e-12 AT1G10790 214 / 8e-63 unknown protein Lus10027118 [exp] 59 / 1e-10 ND / Lus10006886 [exp] 59 / 1e-09 ND / Lus10039353 [exp] 59 / 2e-09 ND / Lus10007681 [exp] 58 / 3e-09 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029472 pacid=23149432 polypeptide=Lus10029472 locus=Lus10029472.g ID=Lus10029472.BGIv1.0 annot-version=v1.0 ATGTTGATCGCCGAGATTTCTGAAGAGAATCTGCCTCCCAAGCTGCACTTGCAGATCAGCCATACATGGAAGCTTGGGAGGCCGTCACGGCCTGATCAAT TTTCCGCCGTCTATACTATATGGACGGACACGGACTTGAATTCTATTCCCTGCATCTGTGGTCCTTTCTGTTTCGTCCGTTCCTCCTACTCCTCGTGCTG CCCTCCTGACTACACCTTAGCTATCTCTGACTTGCAGTGGGGTGAAAATGAAGACTGCTGGTTTCTGCGCTTGATACACTGGTGGCATGAACCTCTTGAA GTCTCACCAGACACAATTCCCTCCATCTATACTCAATGGATTGATATGCATAATGTGTGTTATGCTATTATGGAGGGCCGCATAGAAGGCTACACCCATT CAGGACATTTAGAGGAAGTTGCTGCCCTCCTTTTGCCAGGAACTATTTACGTCGTCCTAGCCCCATACGTCATCCCAGCGGGCTCAACATTTTGGTCATG CCCCGGGGAACTTTCATTCTCATTCCGTGTTTTGATTCATTTCTCGCATTTCAATGCACCCAAAGATTTTGATATCATCGTGCTTGCCACTACTGAACAA CATGGCCCCGTTCTCAACATATTGACCAGCCTAATGGCCCATCAACCACCAGGTTTGTTTCCTCTCGCTGAGTCTTTCTTTGCTTGTGTTGCCTACTTCA CTACCTGCAAATATGTTGCATCTGTTCCTGAGTTAAACACTGACTCGTACTTCCGCATACCCTTATATTCTACTACAGGATACAACAACATCAAGAATCC TCTTTCAGCCCCAAACTTCGACCTTTCGTCGTTATTTCAACATGGTTACAGAACAAGGGTTGAGGATGGTATAGGGTTAGGGTTTGGGTTCAGGGTTTCT CCGGTTTTCATCGGGAGAAACTTCTGTCCATACGGTATACCACATCCTCCCATACCGAATACGACGTATGTCCAGTTGTGCTTAGTGGCAAATCCGAAGT GGTCCAAATTCCACTATTCGGAATAG
AA sequence Show only first row Show all	>Lus10029472 pacid=23149432 polypeptide=Lus10029472 locus=Lus10029472.g ID=Lus10029472.BGIv1.0 annot-version=v1.0 MLIAEISEENLPPKLHLQISHTWKLGRPSRPDQFSAVYTIWTDTDLNSIPCICGPFCFVRSSYSSCCPPDYTLAISDLQWGENEDCWFLRLIHWWHEPLE VSPDTIPSIYTQWIDMHNVCYAIMEGRIEGYTHSGHLEEVAALLLPGTIYVVLAPYVIPAGSTFWSCPGELSFSFRVLIHFSHFNAPKDFDIIVLATTEQ HGPVLNILTSLMAHQPPGLFPLAESFFACVAYFTTCKYVASVPELNTDSYFRIPLYSTTGYNNIKNPLSAPNFDLSSLFQHGYRTRVEDGIGLGFGFRVS PVFIGRNFCPYGIPHPPIPNTTYVQLCLVANPKWSKFHYSE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029472 [exp]	0	1
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10023022 [exp]	5.1	0.8493
AT4G35610	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10035994 [exp]	7.2	0.8477
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10030505 [exp]	9.0	0.8452
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	10.8	0.8421
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	12.0	0.8421
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10042560 [exp]	12.4	0.7019
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	13.2	0.8421
AT2G26390			Serine protease inhibitor (SER...		Lus10039336 [exp]	13.5	0.8420
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Lus10043000 [exp]	15.2	0.8408
AT1G76810			eukaryotic translation initiat...		Lus10023474 [exp]	16.2	0.8368

Compare expression of checked genes

Lus10029472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.