Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15920 1154 / 0 EMB2782, SMC5 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) AT3G47460 70 / 1e-11 ATSMC2 Structural maintenance of chromosomes (SMC) family protein (.1) AT5G61460 67 / 7e-11 SMC6B, ATRAD18, MIM STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07660 65 / 3e-10 SMC6A structural maintenance of chromosomes 6A (.1) AT5G62410 64 / 5e-10 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1) AT3G54670 53 / 1e-06 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039590 [exp] 2004 / 0 AT5G15920 1175 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Lus10029473 [exp] 196 / 3e-58 AT5G15920 76 / 6e-17 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Lus10005338 [exp] 156 / 5e-44 AT5G15920 124 / 8e-34 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Lus10027219 [exp] 71 / 7e-12 AT5G61460 1070 / 0.0 STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027215 [exp] 62 / 3e-09 AT3G47460 1795 / 0.0 Structural maintenance of chromosomes (SMC) family protein (.1) Lus10024895 [exp] 56 / 2e-07 AT3G54670 1604 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10022923 [exp] 54 / 5e-07 AT3G54670 1603 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10013583 [exp] 47 / 9e-05 AT3G54670 410 / 2e-133 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262600 [exp] 1326 / 0 AT5G15920 1427 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Potri.001G125000 [exp] 66 / 2e-10 AT5G62410 1771 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.003G108400 [exp] 64 / 5e-10 AT5G62410 1732 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.003G107700 [exp] 64 / 7e-10 AT5G61460 1237 / 0.0 STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G224900 [exp] 57 / 6e-08 AT3G54670 1540 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Potri.009G155200 [exp] 44 / 0.0006 AT2G27170 1665 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02463 [flax] [poplar] SMC_N RecF/RecN/SMC N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10029476 pacid=23149378 polypeptide=Lus10029476 locus=Lus10029476.g ID=Lus10029476.BGIv1.0 annot-version=v1.0 ATGGCGGAGTCTTCTCGGCGTAAAATGAAGATGGAGCGGCCTCCGGCAGTAGACGAGCCCTTTTCTAAGCGAAGCAAAGCTTCTACAACTGTCCGAGGGG AGGATGATTATATGCCTGGGAGTATCATTGAGATGGAGCTTTCGAACTTCATGACATATGATTCTTTGTTTTGCAAGCCAGCACCACGCTTGAACCTCGT AATTGGCCCCAACGGGTCGGGGAAAAGCTCTATTGTGTGCGCCATTGCACTTGGTCTTTGTGGTGAGCCGCAGCTATTAGGCAGAGCAACAAGTATTGGG GCATATGTTAAGCGTGGAGAGGATTCTGGATACATTAAGATAACTTTAAAGGGAAGCTCAAATAATGAGAAGATTACCATCACACGCAAGATTGACACAC GTAACAAGTCAGAATGGCTATTCAATGGAAAGTTAGTATCAAAGAAGGAGGTTTCCCAAGTAATTCAAAGGTTCAACATCCAAGTTAACAATTTGACGCA ATTCTTGCCACAAGACAGGGTGTGCGAATTTGCAAAGTTAAGTCCTGTGCAACTTCTTGAAGAGACTGAAAAGGCTGTTGGTGATCCCCAACTTCCAATC CAACACTGTGCTCTTGTTGAGAAAAGTCGTGAATTAAAGAATATTGAGCTGGCTGTCAAGAGAAATGGAGAAACTCTTCACCAGTTAAGGGCTCTTAATG CTGAACTTGAAAAGGATGTAGAGCGTGTGCGGCAAAGAGATGAACTTCTAGCAAAGGTGGAATTGATGAAGAAGAAATTGCCATGGCTGGAGTACGATAG GCAAAAGGCGGAATACGAGAAAGCGAAAATTCTTGAAATGGATGCAGATAAGAAGTTGAAAAAAGCTGCGACAAAATTAAAGCATTTCAGTGAGCCGATT GAGTTGAAAAAAACAGAAAGAGTTCGTTTGGAGGATGATTGTAAAAAGGCTGGCAGTATTGTGAAGGCCAATGCAACTCGTCGCATACAACACCAGGACC AGGCGAACCAATTGGAGGTGCAATTTCGAGGAAAATGTATAGAAATAGAGGACTTGCGGAGAGAGGAGGCCTCCCATAAACAAAATGTACTAAAAGTTGA GAAGGATCTTTCTGCTGCTGAAATTGAACTTCAAAACTGCCCTGTTTCTGAACCTCCAAAGGAAGCACTTGAGATGGGGGAAAGGAAAAATAAGATATTA TATGCGTTAAAGAACTCTGGAACGGAGAAGATAATGGAGGCTTACAGCTTGGTACAACAGCATCAAAATGAGCTGAAAAAGCATGTCTATGGTCCAGTTC TGCTTGAGGTTAATGTCTCAGATAAGATCCATGCTGGCTACTTAGAAACCCGTGTGCCATATTACATATGGAAGTCTTTCATCACTCAAGATGCTAGTGA TCGTGATTTTCTGGTCAGAAAGCTTAAGGGATATGATATTCCCATTTTGAACTTTGTAATGGATGAAAGCAGGTGCGGAGGATCCTTTGTAATATCTGAG AAGATGCATGAGTTTGGCATATACTCACGACTTGACCAAGTTTTTGATGCTCCTGATGTTATAAAGAAAGTTTTAATTAGCCAGTGTGGCCTGGACTCAT CTACTCCTGATGCTATACGGAGAGTTTTCATTAGCCAGTGTGGCCTGGCCTTAGCTTATATTGGGTCCAAGGAATCTGCTCAGAGGGCTAATGAGGTCCC AAAGCTGGGTATAATTGACCTTTGGACACCAGAAAATCACTACTCTTGGAAGAAATCTAGATACAGTGATCATGTGACAGCAAGTCTTGATCCAATTAAC CGTTCACGTCTTATCGGTGGAAATTTAAGCACCGGGGAAACTGAGAAGCTGCATGAAAGTATAGCTGAGCTAGAACACGAAGTTTCTGCTATACAAGAAA GTGTGGACTACTCGAAAAAGGAGCTAGTGCTGTTAGAAAATGAAGAATCTAAACTACATAGACAGAGGGAAGAAATTACCAATGAGGCACGGCATGAAAC CCAAAAACGACTCGAGTTGCAAAATCGCATAGATCGAAGGAAAAGAGAGTTACAATCTCTGAAGATTGGAAGTGACTTTGATCGACGGATGGCAAGGCTT ATAGATGATGCAAGAAAGGTTAACATTCAGCGGGTGCAATGTGCAAAGGAAATGAAGACCTTGCTTCTTGAGGCAGTTTCATGCAAACAGAGCTATGCGG CAAAAGAAATGACATCTATTGAGTTTGATGCAAAGGTCAGTGAAATGGAGATCAACTTGAAGGAGCACAAAAAGGTCGCAGAGCAAGCAGCAATTCATCT TCAACACTGCAAGGATGAAGTAGAAAATCAGCGGAAAGAACTCATAGTCGTGAAGAAGCATGCAGAATCGGTTGCTGTCCTAACTCCAGAGCTTGGGCGG GCATTTCATGAGATGCCCACCACAGTTGAGGAATTGACAGCTGCTATTCAGGATAATACGGCCCAAGCTAATTCCATCCTTTTTCTGAACCAAAATGTGC TGGAAGAATATCAACATCGTCAGCAGAAGATAGAAACGATGGACAAGAAACTGGAAGCAGATATTGATGAACAGAAGAGGTGTCTTGAAGAAATAGATGA ACTGAAAGCAAGTTGGCTTCCCAAGTTGAGAAATCTTGTTGCTCAGATAAATGGAACTTTCAGTCGGAACTTCCAGGAGATGGCTGAGGAGATGGCTGTT GCAGGAGAATTTTCCTTGGATGAGCACGACAAAGACTTCGATCAATATGGAATTTTAATAAAAGTGAAGTTCAGGCAAGCAGGAGAACTGAAAGTCCTCA GTGCTCATCATCAATCTGGAGGGGAACGATCAGTTTCAACAATTCTGTATCTTGTTTCACTTCAAGACCTCACTAACTGCCCATTCCGGGTGGTTGACGA AATCAATCAAGGAATGGATCCGATAAATGAAAGGAAGATGTTTCAACAGCTGGTGAGGGCTGCCAGCCAACCAAATACACCGCAGTGTTTCTTGCTAACC CCAAAGTTATTGCCGGACCTGGAGTACAGTGAGGCATGCAGTATTTTGAACATAATGAATGGTCCTTGGATTGATCAGCCTTCTAAAGTTTGGAGCAGCG GTGACTGTTGGAGTGTTGTGAGAGGGCTTGTTCCTTCCCCCCATAGCTAA
AA sequence Show only first row Show all	>Lus10029476 pacid=23149378 polypeptide=Lus10029476 locus=Lus10029476.g ID=Lus10029476.BGIv1.0 annot-version=v1.0 MAESSRRKMKMERPPAVDEPFSKRSKASTTVRGEDDYMPGSIIEMELSNFMTYDSLFCKPAPRLNLVIGPNGSGKSSIVCAIALGLCGEPQLLGRATSIG AYVKRGEDSGYIKITLKGSSNNEKITITRKIDTRNKSEWLFNGKLVSKKEVSQVIQRFNIQVNNLTQFLPQDRVCEFAKLSPVQLLEETEKAVGDPQLPI QHCALVEKSRELKNIELAVKRNGETLHQLRALNAELEKDVERVRQRDELLAKVELMKKKLPWLEYDRQKAEYEKAKILEMDADKKLKKAATKLKHFSEPI ELKKTERVRLEDDCKKAGSIVKANATRRIQHQDQANQLEVQFRGKCIEIEDLRREEASHKQNVLKVEKDLSAAEIELQNCPVSEPPKEALEMGERKNKIL YALKNSGTEKIMEAYSLVQQHQNELKKHVYGPVLLEVNVSDKIHAGYLETRVPYYIWKSFITQDASDRDFLVRKLKGYDIPILNFVMDESRCGGSFVISE KMHEFGIYSRLDQVFDAPDVIKKVLISQCGLDSSTPDAIRRVFISQCGLALAYIGSKESAQRANEVPKLGIIDLWTPENHYSWKKSRYSDHVTASLDPIN RSRLIGGNLSTGETEKLHESIAELEHEVSAIQESVDYSKKELVLLENEESKLHRQREEITNEARHETQKRLELQNRIDRRKRELQSLKIGSDFDRRMARL IDDARKVNIQRVQCAKEMKTLLLEAVSCKQSYAAKEMTSIEFDAKVSEMEINLKEHKKVAEQAAIHLQHCKDEVENQRKELIVVKKHAESVAVLTPELGR AFHEMPTTVEELTAAIQDNTAQANSILFLNQNVLEEYQHRQQKIETMDKKLEADIDEQKRCLEEIDELKASWLPKLRNLVAQINGTFSRNFQEMAEEMAV AGEFSLDEHDKDFDQYGILIKVKFRQAGELKVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLT PKLLPDLEYSEACSILNIMNGPWIDQPSKVWSSGDCWSVVRGLVPSPHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10029476 [exp]	0	1
AT4G31880			unknown protein		Lus10017121 [exp]	1.7	0.9298
AT2G42120		POLD2	DNA polymerase delta small sub...		Lus10016262 [exp]	3.2	0.9245
AT1G26170			ARM repeat superfamily protein...		Lus10000328 [exp]	3.6	0.8826
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10035798 [exp]	3.7	0.8954
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10024919 [exp]	3.9	0.9183
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10006511 [exp]	4.0	0.9124
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008855 [exp]	4.0	0.8942
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10011470 [exp]	5.5	0.9063
AT3G20070		TTN9	titan9 (.1.2)		Lus10026248 [exp]	5.5	0.9083
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10013321 [exp]	5.6	0.8615

Compare expression of checked genes

Lus10029476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.