Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48350 82 / 2e-19 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12410 81 / 9e-19 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT4G13870 75 / 3e-16 WRNEXO, ATWRNEXO, WEX, ATWEX Werner syndrome-like exonuclease (.1.2) AT2G36110 69 / 2e-14 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12470 66 / 3e-13 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G56310 67 / 7e-13 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12460 63 / 4e-12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G62320 55 / 1e-09 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12420 54 / 3e-09 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12430 54 / 6e-09 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039591 [exp] 338 / 4e-120 AT3G12410 86 / 1e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029479 [exp] 201 / 4e-66 AT2G36110 87 / 4e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10039164 [exp] 144 / 3e-43 AT4G13870 105 / 2e-27 Werner syndrome-like exonuclease (.1.2) Lus10013769 [exp] 142 / 2e-42 AT4G13870 105 / 4e-27 Werner syndrome-like exonuclease (.1.2) Lus10043049 [exp] 90 / 4e-22 AT2G36110 121 / 4e-34 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10010357 [exp] 62 / 2e-11 AT3G11770 66 / 7e-13 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10036491 [exp] 61 / 3e-11 AT3G11770 64 / 4e-12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10010930 [exp] 59 / 3e-10 AT1G56310 640 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10022556 [exp] 53 / 3e-08 AT4G13870 246 / 1e-80 Werner syndrome-like exonuclease (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G028700 [exp] 121 / 2e-34 AT4G13870 104 / 5e-27 Werner syndrome-like exonuclease (.1.2) Potri.011G116000 [exp] 118 / 2e-33 AT3G12410 91 / 2e-22 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G031400 [exp] 117 / 6e-33 AT3G12410 101 / 2e-26 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.017G059200 [exp] 72 / 7e-15 AT4G13870 288 / 4e-97 Werner syndrome-like exonuclease (.1.2) Potri.019G021900 [exp] 66 / 3e-13 AT3G11770 77 / 3e-17 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.005G020000 [exp] 61 / 5e-11 AT1G56310 655 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G028400 [exp] 60 / 5e-11 ND / Potri.016G028600 [exp] 54 / 5e-09 ND / Potri.006G031300 [exp] 49 / 3e-07 ND / Potri.013G049000 [exp] 48 / 6e-07 AT5G06450 / Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Lus10029478 pacid=23149425 polypeptide=Lus10029478 locus=Lus10029478.g ID=Lus10029478.BGIv1.0 annot-version=v1.0 ATGGCGGGTAACTACGTGAGATCGGTCTACTTCGGCGGCTACGAAATCGAAACCACGGTGGCCAACCAGGCCTATGTGGTCGCAAACTGGGTTCGATCCT TCCCGCCCGGTCGGAAGAGGATAGTGGGACTGGACTGCGAGTGGAAGCCCTTCTTTTATAACAACCAGAACAATGTAACGGCTGTGCTGCAACTCTGCGT CGAAACCAAGTGCATCATCATACAGATGTCCTACCTCCAATCCATCCCCCAGGCCCTGGCCGATTTCCTCCAGAATCCCAATAACTATTTCGTTGGGGTC GGGGTGGACGCTGACGTGAGGAGGTTAACCGCAGATTACGGGCTGAGCTGCGGCTCAACTGCTGACATTCAGACCATCGCTAGGGACCAGTGGAACATGA GGAATCTTCCTGGGCTGAAGGATATTCTATTACAGGTGGAAGGGGTTGTCATGGAGAAACCGCTGTATGTTACGAGGAGCAATTGGCAGAAGAGACAACT TGACCCCGAGCAGGTTGAGTATGCTTGCATTGATGCTTTTGCTTCTTATAAGATCGGCTACAGTCTGCGACGCTGCATCGATTGTTTTATTTACTAG
AA sequence Show only first row Show all	>Lus10029478 pacid=23149425 polypeptide=Lus10029478 locus=Lus10029478.g ID=Lus10029478.BGIv1.0 annot-version=v1.0 MAGNYVRSVYFGGYEIETTVANQAYVVANWVRSFPPGRKRIVGLDCEWKPFFYNNQNNVTAVLQLCVETKCIIIQMSYLQSIPQALADFLQNPNNYFVGV GVDADVRRLTADYGLSCGSTADIQTIARDQWNMRNLPGLKDILLQVEGVVMEKPLYVTRSNWQKRQLDPEQVEYACIDAFASYKIGYSLRRCIDCFIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48350			Polynucleotidyl transferase, r...		Lus10029478 [exp]	0	1
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10040390 [exp]	16.3	0.8134
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10039094 [exp]	29.7	0.7629
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10039953 [exp]	36.5	0.7472
AT1G29910		AB180, LHCB1.2,...	LIGHT HARVESTING CHLOROPHYLL A...		Lus10027966 [exp]	45.3	0.7741
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10042829 [exp]	71.2	0.7551
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10030967 [exp]	83.7	0.7544
AT3G05950			RmlC-like cupins superfamily p...		Lus10029571 [exp]	89.5	0.7537
AT2G04360			unknown protein		Lus10000124 [exp]	136.1	0.7177
AT1G33330			Class I peptide chain release ...		Lus10032675 [exp]	165.0	0.6816
AT5G14120			Major facilitator superfamily ...		Lus10023961 [exp]	182.1	0.7151

Compare expression of checked genes

Lus10029478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.