Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36110 87 / 4e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12410 84 / 4e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12460 81 / 1e-18 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12430 78 / 1e-17 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12470 77 / 3e-17 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G48350 72 / 1e-15 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT4G13870 71 / 1e-14 WRNEXO, ATWRNEXO, WEX, ATWEX Werner syndrome-like exonuclease (.1.2) AT3G12440 66 / 1e-12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12420 62 / 3e-12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G56310 55 / 6e-09 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029478 [exp] 202 / 2e-66 AT5G48350 82 / 2e-19 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10039591 [exp] 189 / 4e-61 AT3G12410 86 / 1e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10039164 [exp] 130 / 7e-38 AT4G13870 105 / 2e-27 Werner syndrome-like exonuclease (.1.2) Lus10013769 [exp] 126 / 2e-36 AT4G13870 105 / 4e-27 Werner syndrome-like exonuclease (.1.2) Lus10043049 [exp] 100 / 2e-26 AT2G36110 121 / 4e-34 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10022556 [exp] 61 / 4e-11 AT4G13870 246 / 1e-80 Werner syndrome-like exonuclease (.1.2) Lus10010357 [exp] 47 / 2e-06 AT3G11770 66 / 7e-13 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10036491 [exp] 47 / 2e-06 AT3G11770 64 / 4e-12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10010930 [exp] 43 / 0.0001 AT1G56310 640 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G028700 [exp] 124 / 2e-35 AT4G13870 104 / 5e-27 Werner syndrome-like exonuclease (.1.2) Potri.006G031400 [exp] 123 / 4e-35 AT3G12410 101 / 2e-26 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.011G116000 [exp] 119 / 7e-34 AT3G12410 91 / 2e-22 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.017G059200 [exp] 74 / 7e-16 AT4G13870 288 / 4e-97 Werner syndrome-like exonuclease (.1.2) Potri.013G049000 [exp] 55 / 3e-09 AT5G06450 / Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.019G021900 [exp] 50 / 2e-07 AT3G11770 77 / 3e-17 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.005G020000 [exp] 49 / 5e-07 AT1G56310 655 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G028400 [exp] 43 / 3e-05 ND / Potri.002G185500 [exp] 42 / 0.0001 AT3G12410 45 / 1e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Lus10029479 pacid=23149423 polypeptide=Lus10029479 locus=Lus10029479.g ID=Lus10029479.BGIv1.0 annot-version=v1.0 ATGGCAGGCAACAGCATGAAAATCATCCACTTCTCCGGCAGCGACATAGAAACGACTGTGACCGACAAAGCTTCCGACATCGACGCCTGGGTTCGATCCG TCAGGACGGGCCATAAACTGATCGTTGGGCTTGACTGCGAGTGGAGGCCCAACACCACGATATTCATGAACAACAAAGTTGCCCTCCTACAGCTCTGTGT TGGAACAAAGTGCCTCATCATCCAGCTCTTCTACCTTGACCTCATTCCCCAGTCCATGAAGGATTTCCTCCGAGACTCTAATCACACTTTCGTTGGTGTT GAGGTGGCCCGAGATGCGTCCAAGCTGAATGCAGACTACGGGCTGAGGTGTACAACTGTATCTGACGTGCGCGAGATCACTATGGCGAGATGGCCTCACA AGTTCTGGGATAAGCCTGGGCTAAAGGATGTTGCCCTCATAGTTTCGGGGCTTAGAATGCCCAAACAGAAGTATGTTTCCAGGAGTGATTGGCAGAAGAG GCTGCTTGATGACATTCAGATCGAGTATGCTTGTATTGATGCTTTTGCCTCTTCTAGGATTGCCCGTGATTTGGGTATCTGA
AA sequence Show only first row Show all	>Lus10029479 pacid=23149423 polypeptide=Lus10029479 locus=Lus10029479.g ID=Lus10029479.BGIv1.0 annot-version=v1.0 MAGNSMKIIHFSGSDIETTVTDKASDIDAWVRSVRTGHKLIVGLDCEWRPNTTIFMNNKVALLQLCVGTKCLIIQLFYLDLIPQSMKDFLRDSNHTFVGV EVARDASKLNADYGLRCTTVSDVREITMARWPHKFWDKPGLKDVALIVSGLRMPKQKYVSRSDWQKRLLDDIQIEYACIDAFASSRIARDLGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36110			Polynucleotidyl transferase, r...		Lus10029479 [exp]	0	1
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Lus10032680 [exp]	3.2	0.7717
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037616 [exp]	5.1	0.7744
AT1G68030			RING/FYVE/PHD zinc finger supe...		Lus10011320 [exp]	8.4	0.7547
AT5G04270			DHHC-type zinc finger family p...		Lus10037973 [exp]	9.2	0.7020
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10020603 [exp]	10.6	0.7478
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10016975 [exp]	12.7	0.7067
AT1G01020		ARV1	Arv1-like protein (.1.2)		Lus10007219 [exp]	13.0	0.7400
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10028237 [exp]	14.9	0.7331
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10004036 [exp]	16.2	0.7097
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10002946 [exp]	18.2	0.7674

Compare expression of checked genes

Lus10029479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.