Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13720 323 / 2e-111 Uncharacterised protein family (UPF0114) (.1) AT4G19390 181 / 3e-55 Uncharacterised protein family (UPF0114) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016380 [exp] 398 / 6e-140 AT5G13720 317 / 2e-108 Uncharacterised protein family (UPF0114) (.1) Lus10019743 [exp] 377 / 1e-132 AT5G13720 340 / 6e-119 Uncharacterised protein family (UPF0114) (.1) Lus10037258 [exp] 174 / 1e-52 AT4G19390 245 / 3e-81 Uncharacterised protein family (UPF0114) (.1) Lus10035674 [exp] 169 / 8e-47 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10032866 [exp] 149 / 8e-43 AT4G19390 166 / 6e-50 Uncharacterised protein family (UPF0114) (.1) Lus10018793 [exp] 138 / 4e-39 AT4G19390 169 / 1e-51 Uncharacterised protein family (UPF0114) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057300 [exp] 353 / 6e-123 AT5G13720 308 / 8e-106 Uncharacterised protein family (UPF0114) (.1) Potri.004G234600 [exp] 176 / 1e-53 AT4G19390 246 / 1e-81 Uncharacterised protein family (UPF0114) (.1) Potri.014G039000 [exp] 159 / 1e-46 AT4G19390 163 / 1e-48 Uncharacterised protein family (UPF0114) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03350 [flax] [poplar] UPF0114 Uncharacterized protein family, UPF0114
Representative CDS sequence Show only first row Show all	>Lus10029480 pacid=23149367 polypeptide=Lus10029480 locus=Lus10029480.g ID=Lus10029480.BGIv1.0 annot-version=v1.0 ATGGCTCTCTATTCTGTATTCTCCATTTCCCCAGTCTCCATCTCCACTTCAAGAGGAAGTCAGTACTTCGCCCCTAACCGGCGGTTCACTGCTCCCTTAG CTGCTTTCAATTCTTCCCTGCCGTCGTCGTCCCCTGAGTCCAACAAGAACCAATCTTCAAAGTCAAAGCTCTTTGTTGAATCGTCCAAACCTTCTGAGTC CAACTTCAACTACGCACTTGCAAACCCTAATGGCAACCCTGTTGTCCGCTTTGTCCGCTCCACTGAGTCCAAGATCGAAAGGTTTTTGGTTGGTGATTTG CTTTGCTTGGCCATAGCCTGCTCGAATTGTATGGCCTCTGTGAATCCAGTTCCTGATTTGTCCCCACAGTTGAGATTTGTGCTCATGATTGAACAGGCAA TCTTTGACTTCCGGTTCTTGGCGCTTTTTGCTGTTGCGGGTTCCTTGGCTGGTTCACTCCTCTGCTTCCTCAATGGATGCATTTACATTATTGATGCATA CAAAGTTTACTGGACAAGCTGTGTGAAAGGAGTCCATTCAGGACAGATGGTTCTGCATCTTGTTGAGGCCATTGATGTATATCTCGCCGGTACTGTGATG TTGATCTTCGGGATGGGGTTGTACGGACTGTTCATCAGCAATGCCCCGCACGATGTCCACCCGAGTGATGATCGAGCATTGAAAGGGTCGTCCTTCTTTG GGATGTTTGCACTGAAGGAGAGGCCCAAGTGGATGAAGATCAGCTCCTTGGACGAGCTCAAGACCAAAGTAGGGCATGTCATTGTGATGATTCTTCTGGT GAAGATGTTTGAGAGAAGCAAAATGGTGACAATTGCCACAGGGACGGATCTCTTGAGCTACTCGGTCTGTATCTTTTTGTCCTCTGCTTCCTTGTATATC CTCCATAATTTGCACAAGCAGGACTGA
AA sequence Show only first row Show all	>Lus10029480 pacid=23149367 polypeptide=Lus10029480 locus=Lus10029480.g ID=Lus10029480.BGIv1.0 annot-version=v1.0 MALYSVFSISPVSISTSRGSQYFAPNRRFTAPLAAFNSSLPSSSPESNKNQSSKSKLFVESSKPSESNFNYALANPNGNPVVRFVRSTESKIERFLVGDL LCLAIACSNCMASVNPVPDLSPQLRFVLMIEQAIFDFRFLALFAVAGSLAGSLLCFLNGCIYIIDAYKVYWTSCVKGVHSGQMVLHLVEAIDVYLAGTVM LIFGMGLYGLFISNAPHDVHPSDDRALKGSSFFGMFALKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGTDLLSYSVCIFLSSASLYI LHNLHKQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13720			Uncharacterised protein family...		Lus10029480 [exp]	0	1
AT1G28140			unknown protein		Lus10034291 [exp]	4.5	0.9319
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10021115 [exp]	5.9	0.9393
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10017614 [exp]	7.4	0.9230
AT1G73885			unknown protein		Lus10034345 [exp]	7.9	0.9359
AT1G73885			unknown protein		Lus10005112 [exp]	9.3	0.9336
AT5G11840			Protein of unknown function (D...		Lus10039247 [exp]	10.0	0.9330
AT1G64680			unknown protein		Lus10001667 [exp]	11.5	0.9294
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Lus10031284 [exp]	12.2	0.9247
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10000633 [exp]	13.5	0.9263
AT5G43860		ATCLH2	ARABIDOPSIS THALIANA CHLOROPHY...		Lus10039372 [exp]	13.7	0.9113

Compare expression of checked genes

Lus10029480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.