Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62390 856 / 0 CLMP1, Phox2 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT2G25290 401 / 2e-128 Phox1 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein AT4G32070 396 / 6e-126 Phox4 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT5G20360 211 / 8e-58 Phox3 Phox3, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT2G41520 47 / 6e-05 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) AT3G14950 47 / 6e-05 TTL2 tetratricopetide-repeat thioredoxin-like 2 (.1) AT3G07370 45 / 0.0001 ATCHIP, CHIP carboxyl terminus of HSC70-interacting protein (.1) AT4G12400 45 / 0.0002 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G56440 45 / 0.0002 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G56090 44 / 0.0002 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039592 [exp] 1389 / 0 AT1G62390 888 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10001927 [exp] 418 / 3e-135 AT2G25290 879 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001947 [exp] 415 / 5e-134 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001948 [exp] 415 / 8e-134 AT4G32070 864 / 0.0 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10006196 [exp] 370 / 4e-117 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10008035 [exp] 322 / 4e-99 AT2G25290 667 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10038106 [exp] 319 / 4e-98 AT2G25290 655 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10035117 [exp] 68 / 5e-12 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 66 / 6e-11 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G002900 [exp] 1030 / 0 AT1G62390 926 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G021000 [exp] 1018 / 0 AT1G62390 885 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.018G023500 [exp] 448 / 4e-147 AT2G25290 851 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.006G258300 [exp] 442 / 2e-144 AT2G25290 680 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.018G121100 [exp] 377 / 1e-119 AT2G25290 737 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.018G100700 [exp] 72 / 2e-13 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.006G178900 [exp] 68 / 3e-12 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.005G097300 [exp] 45 / 0.0001 AT1G56090 260 / 2e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G050200 [exp] 44 / 0.0004 AT5G12430 821 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.001G119500 [exp] 44 / 0.0005 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10029481 pacid=23149430 polypeptide=Lus10029481 locus=Lus10029481.g ID=Lus10029481.BGIv1.0 annot-version=v1.0 ATGGGGAAATCCGGGGGGAAGAAGAAGAAGGGAACCGCCAATGGCAGTGGCAATTCGACTTCGAATCATGTCCCGGCAGGTGATCAAAATCGTAATCACC TTAAAGCCAATTCAACTGCTAACAATGCTGCTGTGGCTAATGGTAATGGTGGGATAGATGTGGACTCCTCAATTTTTCTAAAGAGAGCCCACGAGCTGAA AGAAGAGGGTAACAAGAGGTTCCAGAACAAAGATTATGTCGGTGCTCTTGAACAGTATGAGAGTGGTCTTCGTTTGACCCCGAATTCCCACCCTGATCGT GCTGTCTTTCACAGTAATAGGGCTGCTTGTATGATGCACATGAAGCCGATTGACTACGACTCTGTCATTTCCGAGTGCTCCATGGCCCTCCAGGTCCAGC CTCGGTTTGTCAGGGCTCTACTCAGGAGGGCTCGTGCTTTCGAGGCTATTGGAAAGTTTGAAATGGCCTTGCAGGATGTTCAGGTCCTGTTGGATGCAGA CTCCAGTCACCGGGATGCTTTGGATATTGCTCATAGATTGAAGACTGCGTTGGGACCTCGACAGGAGGCTCAGCAGGACCTTCAAAGCCGCCCTTCCCCT GCTGCTTTAGGGGCTTCTGCAGTTCGTGGCGCCCCAATCGCTGGCCTGGGACCGTGTTTGCCTGCCCGGCCTATACCAAAGAAGGGTGCAGCTGCTCCTG TTGGCTCAACTGTATCACCTCCCAACAAACTGGAAAAGAATCTGACTACTGTCATTGAGAACGGTCAAGAGACGAAAACACAGCAGCCGAAAGTCATGTT AAGGCCTTCTACTGGTTCTGCTAAAGTGACTTCTGATTCAGGTAAGGATCTTGGTGGAGGGAAGCAATTATATGCCTCATCAAGGCCGGTACCCTCTACC GGGAGAGAATCAGAAGTTGCAGGTAGGCTGAGGCCTGTTAAACTTGTTTATGATCATGACATAAGGCTGGTTCAGATGCCTGTCAATTGCTCTTTCAAAG TCTTGAGGGAGATTGTAAGCAAGCGTTTCCCTTTCTCAAAATCTGTTCTGATCAAGTACAAAGACAATGATGCGGATTTAGTTACAATCACGTCAACGTC TGAGCTCAAGTCAGCAGAATGTGCTGCTGACAGTCCTTTAGTCAAGACTGCTGATCCTGAGATGGTGAATTTGGTTGGGATGTTGAGATTGCATATTGTT GAAGTTTCAGAGGAGCAAGAGCCATGTATACCAGAAGAAATAGAGGAGGTGGAGGAGGAGAAGCCGGTTGAGAGTGAATCTCACTCGTCACTTGGCGAAA CTATCTTGGAAGCCCCTGATAGCGAAATGGATAAAGTAGTAGAGGAAGCTCCAAAGGAAGAGAAAACAGGAGGTTTGGACGATCCAGAGAGTAAGGAAAT TGAAATGGACGACTGGCTATTCGACTTTGCTCAGCTTTTCCGGACCCATGTTGGTATAGACCCCGACGCACATATCGATTTGCATGAGCTTGGGATGGAG TTATGTACCGAGGCTCTTGAGGAGACAGTGACAAGTGAGGAAGCTCAAGTCCTCTTTGATAAGGCTGCTCAGAAGTTCCAGGAGGTGGCTGCATTGGCTT TCTTCAACTGGGGCAATGTCCACATGTGTGCTGCAAGGAAACGGATTCCTTTAGATGAGTCTGCCGGGCAAGATGTGGTTGCCACCCAGCTTCAGACTGC TTATGAGTGGGTGAAGGAGAAATATTCTTCAGCAAGGATGAAATACGAGGAAGCGTTGGTGATCAAGCCGGATTTCTACGAAGGCCTGCTCGCACTAGGA CAGCAACAGTTTGAAATGGCCAAGCTCCACTGGTCGTTTGCCCTCGCCCAGAAAATGGATCTCGCTAACTGGGATTCAACAGAGACGTTGGAGCTCTTTA ATAGCGCGGAGCAGAAGATGAAAGCTGCAACGGAAATGTGGGAGAAGATGGAGGAACAGAGAGCAAAGGAGCTGAAAGATCCAAGTTCGAGCAAGAAAGA TGAATGGTTGAGAAAAAGGAAGAAACATGGAAGCACCAACAACACTGAAAGCGAGGGTGGTCATGTTGAGCCGACGCCAGAAGAAGCAGCTGAGCAAGCA TCAGTAATGAGATCACAGATACATCTCTTCTGGGGGAACATGCTATTCGAACGTTCTCAAGTGGAATGCAAGCTGGGAACTGGTGATTGGAGCAAGAACC TAGATGCTGCAGTGGAGCGGTTCAGGCAGGCTGGAGCTCCGGAAGCAGACATTTCAATGGTGTTGAAGAACCACTTCTCAAATGGAGGTCCAACAAAAGG GGAAGAAGAGAAGGCCAATGGTGTCAGCAGCAAATTGGAGACGGCAAATGGAGAGGTGAAAGAATGA
AA sequence Show only first row Show all	>Lus10029481 pacid=23149430 polypeptide=Lus10029481 locus=Lus10029481.g ID=Lus10029481.BGIv1.0 annot-version=v1.0 MGKSGGKKKKGTANGSGNSTSNHVPAGDQNRNHLKANSTANNAAVANGNGGIDVDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYESGLRLTPNSHPDR AVFHSNRAACMMHMKPIDYDSVISECSMALQVQPRFVRALLRRARAFEAIGKFEMALQDVQVLLDADSSHRDALDIAHRLKTALGPRQEAQQDLQSRPSP AALGASAVRGAPIAGLGPCLPARPIPKKGAAAPVGSTVSPPNKLEKNLTTVIENGQETKTQQPKVMLRPSTGSAKVTSDSGKDLGGGKQLYASSRPVPST GRESEVAGRLRPVKLVYDHDIRLVQMPVNCSFKVLREIVSKRFPFSKSVLIKYKDNDADLVTITSTSELKSAECAADSPLVKTADPEMVNLVGMLRLHIV EVSEEQEPCIPEEIEEVEEEKPVESESHSSLGETILEAPDSEMDKVVEEAPKEEKTGGLDDPESKEIEMDDWLFDFAQLFRTHVGIDPDAHIDLHELGME LCTEALEETVTSEEAQVLFDKAAQKFQEVAALAFFNWGNVHMCAARKRIPLDESAGQDVVATQLQTAYEWVKEKYSSARMKYEEALVIKPDFYEGLLALG QQQFEMAKLHWSFALAQKMDLANWDSTETLELFNSAEQKMKAATEMWEKMEEQRAKELKDPSSSKKDEWLRKRKKHGSTNNTESEGGHVEPTPEEAAEQA SVMRSQIHLFWGNMLFERSQVECKLGTGDWSKNLDAAVERFRQAGAPEADISMVLKNHFSNGGPTKGEEEKANGVSSKLETANGEVKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10029481 [exp]	0	1
AT5G59500			protein C-terminal S-isoprenyl...		Lus10001571 [exp]	1.0	0.9367
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10039592 [exp]	1.4	0.9249
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10019864 [exp]	1.7	0.8991
AT3G61360			Tetratricopeptide repeat (TPR)...		Lus10001784 [exp]	2.4	0.8775
AT1G03100			Pentatricopeptide repeat (PPR)...		Lus10007353 [exp]	4.0	0.8895
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10008792 [exp]	5.3	0.8730
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10042574 [exp]	7.3	0.8465
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Lus10037386 [exp]	7.7	0.8667
AT1G31840			Tetratricopeptide repeat (TPR)...		Lus10009465 [exp]	8.5	0.8683
AT4G26680			Tetratricopeptide repeat (TPR)...		Lus10009548 [exp]	8.8	0.8574

Compare expression of checked genes

Lus10029481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.