Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18520 601 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 283 / 1e-83 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 276 / 4e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 269 / 1e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 264 / 5e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G03380 263 / 8e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 264 / 7e-78 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53360 251 / 2e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26540 249 / 2e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 250 / 1e-72 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039594 [exp] 1193 / 0 AT4G18520 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 281 / 4e-83 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 277 / 9e-82 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 269 / 3e-80 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 265 / 3e-78 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 261 / 7e-77 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 261 / 1e-75 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009913 [exp] 258 / 1e-74 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 255 / 1e-74 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G170300 [exp] 713 / 0 AT4G18520 717 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 290 / 2e-86 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 288 / 2e-86 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 287 / 3e-85 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 280 / 3e-83 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 279 / 4e-83 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G187800 [exp] 281 / 5e-83 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 276 / 3e-82 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G244500 [exp] 267 / 3e-80 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G021700 [exp] 267 / 8e-80 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10029482 pacid=23149431 polypeptide=Lus10029482 locus=Lus10029482.g ID=Lus10029482.BGIv1.0 annot-version=v1.0 ATGATTCCGTTAACCGCCGTCTTATCATTTTCTCTTCTCTCCCAAACGCCAGCGCCTGTGGCCCTTCACCCACTTCACTCTCACTACTTCCCCACCAAGC TCACTACCAGAACAGGAAGAAACCGCGCTGCAACTCCAGCGAATCTCCCTTGCTTCTCTAACAAAGACGACTTCAGCCCCCATTATCCTGACAACACACC TGACTTTCAAAGCTGTGAAGAAGCTAATGGTCCAGGTTGCCGCTCCTCGCCACCGTGGAGTCGGTCCGTCGACTCTGTTCTGCTCGGGCAATGGCTTCAG TCATGCGATAAAGTAAAAAACGTCAAGATGGTTCATGCCGTTTCCTACAGGTGTTCAAGGAGTTCTGTAGTATATGTAAATAATAATTTAATCAGCGCTT ATTCAAGACTGGGTGTGCTGGACCACGCACGCAAGACGTTTGACGAAATGCCGCAGCGAAATGTTGTTAGTTGGACGGCAATGATTGATGCGTACTCTAA TGCTGGATTGGATGACGAAGCTTTGAGTTTGCTTATCAAGTGCATAGAGAGTGGAATTGGAGCCAACGGCAAAACCTTTGTGTGTGGTTTGAATTTATGT AGTCGCAGGTTGGATTTTGATCTTGGCAGGCAAGTTCATTCTAGTATTGTGAAGGAGAATTGGAGGAACGTAATCGTTGATAGTGCCATTGTTCATTTCT ATGCAAAATCTGGCGACTTGACTGCTGCTTTTTGCGCATTCGATAGCATGGTAGAGCGGGATGTGGTAAGTTGGACGACTATGATTGCAGCTTGCTCGCA GCAAGGGCTTGGAATAGAGACTTTTGGACTGTTGTCACGAATGTTAAGCAGTGGATTGTCACCTAATGAGTTCACTGTATGTAGTGTTCTAAAGGCTTGC GGGGAGGAAAAGGCACTCAGGTTGGGAAGGCAGCTACACGGATCCATACTCAAGAAAATGTGGGAGCATGATGTTTTTACAGGATCTTCCTTAGTCGATA TGTATGCAAAATGTGGCAAGATTCTCGATGCTCGTAAAGTGTTCAATATCATGAGAAGAAAGAACACAGTTACCTGGACTTCCCTTATCGCAGGCTATGC CAGGGCAGGGCTCGGCGAGGAGGCCATAAGTCTGTTTCAACTGATGCAGAAGCGGAAAGTAAGTAGAAGCAACTTAACCACAGTGAGTATTCTGAAAGCT TGCGGTTCAATTTTAGCATTGAAGACTGGGAAAGAAGTTCATGCGCAAATCATCAAGGACTCGGTGCAATCAAACGAGTACATAGGAAGTAGCCTTGTGT GGTTCTATTGCAAATGTAGTGAATGGCACACTGCGGCAAAGGTGTTCCAACAAATGTCTCTCCAGAGCGTTGTTTCGTGGACTGCCATGATTTCGGGATT TGCAGATCTTGGTCACGAGTCCGAGGCACTGGGGTTTCTGATAGAGATGATGGAGGAAGGAGTGCAACCGAATACATTCACGTACTCGTCTGCCTTGAAG GCATGTGCTGGTCTTAACTCTGTTCAGCAAGGGAAATCGATACACTCCTTTGCAAGCAAGACCAAAAGCATGGGTAATGTGTATGTAGGTACAGCATTAG TTCATATGTATGCCAAAGGCGGGTATCTACCGGAGGCGATTCAGGTGTTTGATGAGATGCCTGAGCGGAATCGGGTTTCTTGGAAATCGATGATCACAGG TTACACCAAGAATGGGCTGTTTGAACAGGCGCTGAGGCTCATGTACAGGATGCAAGCGGAAGGTCATAACGTCGACGGTTATGTTTCTGCAAATGTATTT GGTGCGTTTGGAGAGAAAGGAGATGCAGGGAAGGGTAAGAGAGTGGTAATGGGGCACGCAGTTCATCTGGATACTACTTGA
AA sequence Show only first row Show all	>Lus10029482 pacid=23149431 polypeptide=Lus10029482 locus=Lus10029482.g ID=Lus10029482.BGIv1.0 annot-version=v1.0 MIPLTAVLSFSLLSQTPAPVALHPLHSHYFPTKLTTRTGRNRAATPANLPCFSNKDDFSPHYPDNTPDFQSCEEANGPGCRSSPPWSRSVDSVLLGQWLQ SCDKVKNVKMVHAVSYRCSRSSVVYVNNNLISAYSRLGVLDHARKTFDEMPQRNVVSWTAMIDAYSNAGLDDEALSLLIKCIESGIGANGKTFVCGLNLC SRRLDFDLGRQVHSSIVKENWRNVIVDSAIVHFYAKSGDLTAAFCAFDSMVERDVVSWTTMIAACSQQGLGIETFGLLSRMLSSGLSPNEFTVCSVLKAC GEEKALRLGRQLHGSILKKMWEHDVFTGSSLVDMYAKCGKILDARKVFNIMRRKNTVTWTSLIAGYARAGLGEEAISLFQLMQKRKVSRSNLTTVSILKA CGSILALKTGKEVHAQIIKDSVQSNEYIGSSLVWFYCKCSEWHTAAKVFQQMSLQSVVSWTAMISGFADLGHESEALGFLIEMMEEGVQPNTFTYSSALK ACAGLNSVQQGKSIHSFASKTKSMGNVYVGTALVHMYAKGGYLPEAIQVFDEMPERNRVSWKSMITGYTKNGLFEQALRLMYRMQAEGHNVDGYVSANVF GAFGEKGDAGKGKRVVMGHAVHLDTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10029482 [exp]	0	1
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10039594 [exp]	1.0	0.9486
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	1.4	0.9242
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10025665 [exp]	2.8	0.8882
AT3G09060			Pentatricopeptide repeat (PPR)...		Lus10030513 [exp]	3.3	0.8543
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10026460 [exp]	3.5	0.9088
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10025009 [exp]	4.2	0.8735
AT4G10620			P-loop containing nucleoside t...		Lus10035986 [exp]	5.2	0.8227
AT1G77405			Pentatricopeptide repeat (PPR)...		Lus10029697 [exp]	6.0	0.8601
AT3G46870			Pentatricopeptide repeat (PPR)...		Lus10016476 [exp]	6.2	0.8414
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10008570 [exp]	8.4	0.8716

Compare expression of checked genes

Lus10029482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.