Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 372 / 3e-113 disease resistance family protein / LRR family protein (.1) AT4G20140 251 / 9e-69 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G15080 248 / 2e-68 AtRLP19 receptor like protein 19 (.1.2) AT5G44700 249 / 7e-68 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G74170 240 / 1e-65 AtRLP13 receptor like protein 13 (.1) AT4G04220 234 / 1e-64 AtRLP46 receptor like protein 46 (.1) AT5G46330 233 / 8e-63 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G32680 230 / 9e-63 AtRLP23 receptor like protein 23 (.1) AT3G05660 228 / 3e-62 AtRLP33 receptor like protein 33 (.1) AT5G07280 229 / 1e-61 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016384 [exp] 1204 / 0 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 459 / 8e-145 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 451 / 7e-142 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 449 / 7e-141 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 442 / 1e-138 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 442 / 3e-138 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 442 / 3e-138 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 439 / 3e-137 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 435 / 3e-135 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262800 [exp] 799 / 0 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 490 / 1e-156 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 488 / 7e-156 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 436 / 1e-136 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 434 / 5e-136 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 433 / 2e-135 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 433 / 2e-135 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 424 / 1e-130 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 404 / 8e-124 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 403 / 4e-123 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10029483 pacid=23149433 polypeptide=Lus10029483 locus=Lus10029483.g ID=Lus10029483.BGIv1.0 annot-version=v1.0 ATGGATGGTTTTCTCACACTGCTGCCAGCTTTATTCTGTGCCATTCTTCTCATGCCATTGCCTGCTTCATCGGTAGCTCAATTCGGAAAGGCTGAAGTGG AGTGCCTGGAATCTGACAGGGAATCACTGATGGACTTCAAGAATGGATTGATAGATCCATCCAATCGGACAGCATCATGGACAGGAAGCAACTGCTGCCA ATGGAGCGGAATCGCTTGCGACAACACAACCGGAGCTGTCATTTCAGTCGATCTCCAGAGCCAACATGTGTTGAACTTATATGAACCTGGTTATGATGCC CTCTCAGGTGAGATCAGACCTTCATTGGCACTGCTCAAGTCATTGAGACGCTTGGACCTCAGCTCCAATGCATTTGAAGGCCTACAGATTCCAGACTTCC TTCAATCGTTACAGGAATTAGAGTATCTGAACTTAGCAAATGCCGGGTTCTATCGGATGATCCCACCAACCTTGGGGAACATCTCCACGTTGCAGTATCT TAATATTTCTTCATACCGCTCAGATTTGCAAGTAAACAGTCTGGAATGGCTAAGCTGTCTTGTCTCACTAAGATACCTGGTTTTGAATGGCGTTGATCTC TCGAGAGCGGGTTCGAATTGGATCAAGGCATTGGATACGATTCCATTTCTAACTGATGCTCACCTGTCCCTTTGTAATCTAAACAGCCCCATTTCAGACA GGAGCTTCAAGAACCTGAGCTCACTTTCGGTTCTCGATCTAAGCCTCAACAGCTTCAACTCAAAATTCCCTTACTGGATCGGTAACATCAGCAGCTTGAC TACCATTGATATGGAAGAGGGCGAATTGCGTGGCAGTTTTCCAATTGTTTTCAGTGAGATTCCAAATTTGCAGTTCTTGTACCTTGCTAGAAACCAGCTT GCTTCTGACGTGGCTGATGTCTTTAACAGGGGTTGGAGTAGGTTACAAGGTCTGGACTTGACTTTGATGAATCTCCATGGTGAGATTCCGGAGCAGATAG GAAACATTACATCTCTAACTTACCTTGATTTAAGTGACAACCAGATCAATGGAAGGATCCCGAGCACCATTTCTGCCCTATGTGAGCTAAGCCATCTTGA TTTGTCAAATAATCGCCTTTCGGGAATGCTGCAGATTCTGGAAAGAACAGATAACCATTGCCATTCAGCTAGTCTTTTACCGCACCTGGAGAAACTATTC CTAGACAACAACACAATAGCAGGTGGATTACCAAATTGGTTGGGTAAGCTTCAGAATCTCAGAACACTAAGCCTGGAATCCAACTCTATTGAAGGTCCAA TCCTTCCTTCATTAACAACATTGACCCGTTTGAACGTACTCAAACTTGGCGACAATAAGTTAAATGGTACTCTTCCAGCGAGTTTGGAACAGCTTACTAA ACTGAGGTCCCTAGATGTATCGTTCAATCGACTTCATGGTATCGTCTCTGAAGCCCATTTCCACAAGATGAAGAGCTTGGGAATATTAAAGCTATCTTCC AACTCTTTCATTGTGAATATCAGTTCCCTTTGGGATCCTCCCTTTCAACTTTGGAATCTTGGAATGGGTTCTTGTCACGTGGGTCCTACATTTCCTCTAT GGCTTAAATCCCAGCAGCGACAACTAACGTTTCTAGATCTGTCAAATGCTAGTATCTCTGGCAATATTCCTTCCTGGTTTTGGGATATGACAGGAGGTCT GAAGATACTGAATTTCTCCATTAATCAATTCCAGGGGAAACTGCCAAGTACACTGAACTTTACTTCCTTTGCAAATGTTGATTTCAGCTTCAACCAGTTT GAAGGATCCATTCCTCTGGAATCAGTAAATGAACTTCGCTTGGTCACTCTTTCGAACAACAAACTCTCAGGAACCATTCCAGAGAATATAGGAAGTGTTC ATAACATGGGGAATGTAGCTTACCTTTCTCTATCAGCTAACCAACTCACTGGTCATATTCCAGATTCTATTGGAAACTTAAGGCAGGCAGTAGGAATTGA CCTTTCTTACAACAATTTAACAGGTAGCATCCCAACAACTTTGGGTAATTGTTTATATCTTCAGGTAGCGGATCTACAGAACAATAATTTATCAGGGGTA ATACCTGATTCTCTGGGTCAGTTAAGTCATCTCTTATCGCTTCACCTCAGGGACAATATGATCACAGGAGAGATTCCAAGGTCTTTTCGGAACCTGTCAA GTCTCGAGACATTGGACCTCGGCCATAATGGATTAACTGGTGAACTCCCATTGTGGATGGGATACTTGATGTCAAGCCTCAGGATTCTTTCCCTAAGGTC AAACTCATTCTCAGGACAGCTTCCGTTCACATTGTCGAGGTTGGGATCCCTGGTAGTCCTAGATTTAGCAAAGAACCAGTTCAACGGAACGGTTCCTGCT GGGTTCAGAAACCTCAAATCAATGAGGCAAAAACACAACACATTTCGTTACTGGAGATACCTGCTGGGCAGTGGCAACTACAAAGAAAACATCATTGTGA GCACAAAGGGAAACTCGTGGCAATTCACCAAGACTCTATCCTTCCTTACCTGCATCGACCTTTCTAACAACCATTTCCAGGGAGATTTCCCGAACCACCT GACGAATTTACTTGGACTGGTGGTTTTGAGCTTGTCAGGAAATCAATTCAAAGGCCAGATACCATCCAACATATCAGAGCTCAGCCAGCTATCTTCACTC GATCTATCCAACAACCAACTTTCCGGATCGATTCCTCCAAGCTTGGCTGGAATGTCATTTATGGGGTACCTAAACCTGTCAAACAACAACTTTTCAGGCA GAATACCATTCAGTGGCCAGCTAGCTACGTTTGAAGCACCAGCTTTTGGTGGAAATCCTAGTCTGTGTGGACCTCCTCTTGATGCCAATTGTTCTTCAAA TGAAGGTTCTGCTAACTCAGGATCACACGGAAATCAAATTAGCGATGGTGAAGTACACGTGGACATGATAATGTGCTTCATCACAGCATTGGGATTCGCT GCTGGAATATCAGCTCCCTTTTATGTCCGTGCAATTAGAAGGTCATGGAGCGAAGCCTACTTTGGCTTCGTCGACAGAACAGTAGACAGATTGCAACCAA TTGGATGCGAAATCATGAAACTTCTCAAGACTTGCTTGTTTCCAAAGCTTTGA
AA sequence Show only first row Show all	>Lus10029483 pacid=23149433 polypeptide=Lus10029483 locus=Lus10029483.g ID=Lus10029483.BGIv1.0 annot-version=v1.0 MDGFLTLLPALFCAILLMPLPASSVAQFGKAEVECLESDRESLMDFKNGLIDPSNRTASWTGSNCCQWSGIACDNTTGAVISVDLQSQHVLNLYEPGYDA LSGEIRPSLALLKSLRRLDLSSNAFEGLQIPDFLQSLQELEYLNLANAGFYRMIPPTLGNISTLQYLNISSYRSDLQVNSLEWLSCLVSLRYLVLNGVDL SRAGSNWIKALDTIPFLTDAHLSLCNLNSPISDRSFKNLSSLSVLDLSLNSFNSKFPYWIGNISSLTTIDMEEGELRGSFPIVFSEIPNLQFLYLARNQL ASDVADVFNRGWSRLQGLDLTLMNLHGEIPEQIGNITSLTYLDLSDNQINGRIPSTISALCELSHLDLSNNRLSGMLQILERTDNHCHSASLLPHLEKLF LDNNTIAGGLPNWLGKLQNLRTLSLESNSIEGPILPSLTTLTRLNVLKLGDNKLNGTLPASLEQLTKLRSLDVSFNRLHGIVSEAHFHKMKSLGILKLSS NSFIVNISSLWDPPFQLWNLGMGSCHVGPTFPLWLKSQQRQLTFLDLSNASISGNIPSWFWDMTGGLKILNFSINQFQGKLPSTLNFTSFANVDFSFNQF EGSIPLESVNELRLVTLSNNKLSGTIPENIGSVHNMGNVAYLSLSANQLTGHIPDSIGNLRQAVGIDLSYNNLTGSIPTTLGNCLYLQVADLQNNNLSGV IPDSLGQLSHLLSLHLRDNMITGEIPRSFRNLSSLETLDLGHNGLTGELPLWMGYLMSSLRILSLRSNSFSGQLPFTLSRLGSLVVLDLAKNQFNGTVPA GFRNLKSMRQKHNTFRYWRYLLGSGNYKENIIVSTKGNSWQFTKTLSFLTCIDLSNNHFQGDFPNHLTNLLGLVVLSLSGNQFKGQIPSNISELSQLSSL DLSNNQLSGSIPPSLAGMSFMGYLNLSNNNFSGRIPFSGQLATFEAPAFGGNPSLCGPPLDANCSSNEGSANSGSHGNQISDGEVHVDMIMCFITALGFA AGISAPFYVRAIRRSWSEAYFGFVDRTVDRLQPIGCEIMKLLKTCLFPKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10029483 [exp]	0	1
					Lus10005948 [exp]	3.0	0.8144
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Lus10037117 [exp]	3.5	0.8316
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10028397 [exp]	3.6	0.8526
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	4.9	0.8368
AT4G13450			Adenine nucleotide alpha hydro...		Lus10014459 [exp]	6.6	0.8359
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10017749 [exp]	7.3	0.8408
AT2G34930			disease resistance family prot...		Lus10039522 [exp]	7.5	0.7594
AT5G35390			Leucine-rich repeat protein ki...		Lus10022946 [exp]	7.5	0.7906
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10018704 [exp]	10.0	0.7580
AT2G22560			Kinase interacting (KIP1-like)...		Lus10012730 [exp]	10.5	0.8045

Compare expression of checked genes

Lus10029483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.