Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19440 354 / 3e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 351 / 4e-122 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 287 / 6e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 281 / 6e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 277 / 5e-93 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09500 270 / 1e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G66800 265 / 2e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G15950 213 / 1e-67 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT4G35420 206 / 3e-65 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G80820 197 / 2e-61 CCR2, ATCCR2 cinnamoyl coa reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039595 [exp] 482 / 9e-174 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 345 / 2e-119 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 320 / 1e-109 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 318 / 5e-109 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 317 / 2e-108 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 303 / 7e-103 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 276 / 2e-92 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 290 / 1e-91 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2) Lus10026072 [exp] 261 / 2e-83 AT5G19440 339 / 1e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057600 [exp] 422 / 5e-150 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 362 / 2e-126 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 357 / 3e-124 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 328 / 5e-113 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057800 [exp] 310 / 1e-105 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045000 [exp] 216 / 7e-69 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045500 [exp] 215 / 2e-68 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.003G181400 [exp] 214 / 3e-68 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 214 / 4e-68 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 213 / 8e-68 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10029484 pacid=23149397 polypeptide=Lus10029484 locus=Lus10029484.g ID=Lus10029484.BGIv1.0 annot-version=v1.0 ATGAGCGAGAGAGGAAAAGGAAAGGTGGTCTGTGTGACTGGAGTTTCAGGCTACATAGCATCATGGCTGGTGAAGTTACTTCTTCAACGAGGATACATGT TAAAGCTACAGTCCGACCCAAATGATGCCAAGAAGACTGAACATTTGCTTGCACCTGAGGGAGCCAATGAGCGGTTGGAACTGTTCAAGGCAGACTTGCT GGATGAAGGGTCATTTGATAACGTTGTTGAGGGATGTGAAGGTGTTTTCCACACCGCTTCCCCATTTTTCTTCAATGCGACTGATCCTCAGAGAGTGGTC ATCACATCATCCATGACAACGGTGGCATTCAATGGAAGAACTCTTGCTCCTGATGTGGTTGTTGACGAGACTTGGTTCTCTGATGCAGACATCTGCACAA AATCAAAGTTGTGGTACATGCTGGCGAAAACATTAGCGGAAGAACTTTCTTGGAAGTTTTCAAAAGAGAATGGTATGGATATAGTTTCACTAAATCCAGG CCTAGTAATTGGCCCTCTCTTGCAACCAACGTTGAATACGAGCGCAGAGTCGGTGCTGAACCTTGTAAAGGGGGTGGAAAAGTATCCAAACACAACATAC AGGTGGGTAGATGTTAGAGATGTTGCTTATGCCCATATATACGCAATGGAGAATCCTTCAGCTGGTGGAAGATACTCCTTAGTCGGAGCAGTTTTACATG CTTCTGAAACAGTGAATATATTGCATGAGCTTTTCCCTGACCTCAACATCCCTCAAGAATGCGCGGATGATAAGCCACCAATGCCGAAATATCAAATACA CTCCTCTTGA
AA sequence Show only first row Show all	>Lus10029484 pacid=23149397 polypeptide=Lus10029484 locus=Lus10029484.g ID=Lus10029484.BGIv1.0 annot-version=v1.0 MSERGKGKVVCVTGVSGYIASWLVKLLLQRGYMLKLQSDPNDAKKTEHLLAPEGANERLELFKADLLDEGSFDNVVEGCEGVFHTASPFFFNATDPQRVV ITSSMTTVAFNGRTLAPDVVVDETWFSDADICTKSKLWYMLAKTLAEELSWKFSKENGMDIVSLNPGLVIGPLLQPTLNTSAESVLNLVKGVEKYPNTTY RWVDVRDVAYAHIYAMENPSAGGRYSLVGAVLHASETVNILHELFPDLNIPQECADDKPPMPKYQIHSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10029484 [exp]	0	1
					Lus10020919 [exp]	13.0	0.4919
AT1G51940			protein kinase family protein ...		Lus10026689 [exp]	16.6	0.5235
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10013961 [exp]	29.0	0.4931
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10026691 [exp]	30.0	0.5031
AT1G55790			Domain of unknown function (DU...		Lus10032899 [exp]	39.5	0.4900
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10004323 [exp]	61.3	0.4393
AT2G29260			NAD(P)-binding Rossmann-fold s...		Lus10016500 [exp]	65.6	0.4545
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10006821 [exp]	72.9	0.4621
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10031433 [exp]	88.7	0.4178
AT5G40350	MYB	ATMYB24	myb domain protein 24 (.1)		Lus10014557 [exp]	106.6	0.4192

Compare expression of checked genes

Lus10029484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.