Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39980 50 / 2e-08 HXXXD-type acyl-transferase family protein (.1) AT5G01210 49 / 9e-08 HXXXD-type acyl-transferase family protein (.1) AT3G50290 47 / 2e-07 HXXXD-type acyl-transferase family protein (.1) AT3G50280 46 / 6e-07 HXXXD-type acyl-transferase family protein (.1) AT5G67150 45 / 1e-06 HXXXD-type acyl-transferase family protein (.1) AT5G67160 44 / 4e-06 EPS1 ENHANCED PSEUDOMONAS SUSCEPTIBILTY 1, HXXXD-type acyl-transferase family protein (.1) AT5G42830 43 / 9e-06 HXXXD-type acyl-transferase family protein (.1) AT3G50300 41 / 5e-05 HXXXD-type acyl-transferase family protein (.1) AT5G23940 40 / 6e-05 PEL3, DCR, EMB3009 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) AT3G50270 40 / 8e-05 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031725 [exp] 61 / 5e-12 AT3G50300 198 / 2e-59 HXXXD-type acyl-transferase family protein (.1) Lus10031148 [exp] 58 / 6e-11 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 56 / 3e-10 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 50 / 5e-08 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10040222 [exp] 47 / 3e-07 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 47 / 3e-07 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10027779 [exp] 46 / 1e-06 AT5G01210 350 / 7e-119 HXXXD-type acyl-transferase family protein (.1) Lus10024809 [exp] 43 / 1e-05 AT5G42830 442 / 8e-153 HXXXD-type acyl-transferase family protein (.1) Lus10027500 [exp] 40 / 7e-05 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G112400 [exp] 53 / 2e-09 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 52 / 5e-09 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 52 / 5e-09 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 52 / 6e-09 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 51 / 1e-08 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Potri.010G192400 [exp] 49 / 1e-07 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 47 / 3e-07 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025600 [exp] 45 / 1e-06 AT5G42830 565 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 45 / 1e-06 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 45 / 1e-06 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10029486 pacid=23149452 polypeptide=Lus10029486 locus=Lus10029486.g ID=Lus10029486.BGIv1.0 annot-version=v1.0 ATGGCACAACCTCTATCTACATCGACCGCAACAACGCCAGCGCTCTGTTCATCCACGCCGTTGCTAACTCCATCTCTATCACTGATATCCTGGAGCCTCT CAATGTCCCTCCCGTTCTTTGGTCCTTCTTCCCACTCAATCGGCGTCAAAATTTGTCACGGATTCTCCCAGCCACTTCTTGCAGTCCAGATTACAGAGCT CGTCAACGGGATCTTCATCGGGTGCACGATTAGCTATGCTGTGGCCGATGGTACTACAGCAGGAGTTGAAAGAGCGAGTTCTCCACTTCAGCCGCGACAA ACTCTGGACGCTTAA
AA sequence Show only first row Show all	>Lus10029486 pacid=23149452 polypeptide=Lus10029486 locus=Lus10029486.g ID=Lus10029486.BGIv1.0 annot-version=v1.0 MAQPLSTSTATTPALCSSTPLLTPSLSLISWSLSMSLPFFGPSSHSIGVKICHGFSQPLLAVQITELVNGIFIGCTISYAVADGTTAGVERASSPLQPRQ TLDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10029486 [exp]	0	1
					Lus10024827 [exp]	2.0	0.5849
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Lus10002196 [exp]	20.7	0.4901
AT3G51560			Disease resistance protein (TI...		Lus10029858 [exp]	30.7	0.4739
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010863 [exp]	30.9	0.4822
					Lus10019558 [exp]	34.3	0.4630
AT4G16195			Plant self-incompatibility pro...		Lus10019768 [exp]	35.8	0.4630
					Lus10021773 [exp]	37.3	0.4630
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	38.7	0.4630
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10009278 [exp]	38.8	0.4730
					Lus10039552 [exp]	40.1	0.4630

Compare expression of checked genes

Lus10029486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.