Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034056 [exp] 174 / 5e-50 AT4G19130 47 / 4e-05 Replication factor-A protein 1-related (.1) Lus10006887 [exp] 171 / 8e-48 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1) Lus10036312 [exp] 164 / 1e-45 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10042979 [exp] 158 / 5e-43 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10001199 [exp] 137 / 4e-39 ND / Lus10030315 [exp] 132 / 5e-34 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2) Lus10025008 [exp] 126 / 3e-32 AT5G08020 64 / 9e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10010590 [exp] 115 / 3e-28 ND / Lus10026445 [exp] 110 / 8e-27 AT4G19130 41 / 0.002 Replication factor-A protein 1-related (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029487 pacid=23149444 polypeptide=Lus10029487 locus=Lus10029487.g ID=Lus10029487.BGIv1.0 annot-version=v1.0 ATGTCCGGCCAACTGCTTTGCTGTCGGCACGATTTGGACAGACGCGGAGGTGGTGTCGGCATTCTTTTTCCCCGTTGGGTCTCCGCCGCCCCTTACTGCC ATCGCTACCGTCTCTGGGTCTCTTTGACCTCTGTTTCCTTGCCTTTTCAGGGCGCTCGCATTCAGGGTGATTCCCACAGGAATTTCGTTGGTGTTTTGGA GAAGCGCGTTACGGTCGGCCGTGTTTATAAAGTCTCCGGCTCCCCCCTCCGACCTCCCCGCCCTCGCTACCATACATGCCTTTCAGGTCACTGGATATCC CTGACTGCAACTACGAAGTTCGACCTCCAGGACACCCTGGACCTCCCATTCAAACCCGAGGCGTTTGAGTTTGTACTCTTCCCAAAGCTGCCCTCCCGTG TGCATCCATCACCGTTTGGCAGCCTAGAGGTTGACGTGTCCCTGTGGTATGAACTCTCACATTTAATATATGCAGCCACTGTTGTCCTAGACGATGCTGT CAACCCTGTTGTCGCTAAACCACGTCCAATTACCATTGTCCCTCCAAAGTTTTCTACCCCTGAGAAATTGAAACAACACCTTACCGAGTCACAGCGGACC ATCCACGAGCTGCTAGCCCTATATACTGAGGGTGGCGACTCGGTGAGTCATCTCCGAATTCGCGCTTTTGTTGTTCTCAAACAATTCTGCGTTCTTATGC TCTCTTTCCCCGCTGACACCACGAATCATGATACTGTCCTTGCTTCGGATGTAACATACATGTACGCATCCATTGTGTGCCATTTTACAATCCGAATATA TGTTCCACTTTTCGCTTTCCCAGTTAGACCGCTGCCTTCGTCCTCTAGGTATCGTTTAAAGCTAGATGTTCGTGATGACACGACTGAAACAACGTTCGTT CTGTTGGGTCTTTCTGCTGATCGGATTCTTCCAATAAGTGCTGCTGAACTGGCGCTGGCATACCCTTATGATTAA
AA sequence Show only first row Show all	>Lus10029487 pacid=23149444 polypeptide=Lus10029487 locus=Lus10029487.g ID=Lus10029487.BGIv1.0 annot-version=v1.0 MSGQLLCCRHDLDRRGGGVGILFPRWVSAAPYCHRYRLWVSLTSVSLPFQGARIQGDSHRNFVGVLEKRVTVGRVYKVSGSPLRPPRPRYHTCLSGHWIS LTATTKFDLQDTLDLPFKPEAFEFVLFPKLPSRVHPSPFGSLEVDVSLWYELSHLIYAATVVLDDAVNPVVAKPRPITIVPPKFSTPEKLKQHLTESQRT IHELLALYTEGGDSVSHLRIRAFVVLKQFCVLMLSFPADTTNHDTVLASDVTYMYASIVCHFTIRIYVPLFAFPVRPLPSSSRYRLKLDVRDDTTETTFV LLGLSADRILPISAAELALAYPYD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029487 [exp]	0	1
					Lus10029488 [exp]	1.0	0.7741
AT4G21870			HSP20-like chaperones superfam...		Lus10007666 [exp]	11.4	0.7005
AT3G44670			Disease resistance protein (TI...		Lus10037667 [exp]	13.5	0.7345
AT1G48745			unknown protein		Lus10013499 [exp]	13.6	0.6391
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016438 [exp]	17.2	0.6845
AT3G13810	C2H2ZnF	ATIDD11	indeterminate(ID)-domain 11 (....		Lus10004840 [exp]	17.7	0.6815
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10035240 [exp]	19.2	0.6752
					Lus10024691 [exp]	19.4	0.6988
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Lus10010749 [exp]	21.6	0.6957
					Lus10010661 [exp]	21.9	0.6289

Compare expression of checked genes

Lus10029487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.