Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026444 [exp] 86 / 5e-20 ND / Lus10017800 [exp] 72 / 7e-17 ND / Lus10003030 [exp] 74 / 1e-16 ND / Lus10014851 [exp] 71 / 1e-14 ND 34 / 0.005 Lus10042979 [exp] 68 / 1e-13 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10007779 [exp] 64 / 4e-13 ND / Lus10017801 [exp] 50 / 7e-08 ND / Lus10039353 [exp] 47 / 3e-06 ND / Lus10006920 [exp] 46 / 4e-06 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029489 pacid=23149441 polypeptide=Lus10029489 locus=Lus10029489.g ID=Lus10029489.BGIv1.0 annot-version=v1.0 ATGGACCACCCATGTTGTATTCCATACAACAATGAACGCATGCTCATTCGCTTCAAAAACTTTAAACCGCCTGCTGCTCTTGATCTACAACACGTTATTT CCATAGAACTCCGTGGACCTATCATCTGCATTCTGACAGCTGTGATTGTTGCAAATCCTACCTGTTCTCACACTTGCATGTTCCGGTTCGAGCACTCCAT CCAACTATGCCACACCAGTTTGCTTTCTTACCTGGCGATCTACCCAAAAAAATGTACCTCTCGGCCCTCCTCAAACGTCGCCCCCTTATGCCACCCGACC GTAATGACATCTGCTTGCCTCCTCTTCCGTATGCCGGCAGACGAATATGTCTGCTTGCCGTATGAGCAAGAGAATGAACTTTTACTAGGCCTCCAAGGAA ATGTTTTCATGGTCGACCTCCACCCTGTTGACCCTGGTCACATTGATCATGCCAAGTTTGTTGCTACTACCATTTGGGACCCTGTTGCAGCCTACTACTA G
AA sequence Show only first row Show all	>Lus10029489 pacid=23149441 polypeptide=Lus10029489 locus=Lus10029489.g ID=Lus10029489.BGIv1.0 annot-version=v1.0 MDHPCCIPYNNERMLIRFKNFKPPAALDLQHVISIELRGPIICILTAVIVANPTCSHTCMFRFEHSIQLCHTSLLSYLAIYPKKCTSRPSSNVAPLCHPT VMTSACLLFRMPADEYVCLPYEQENELLLGLQGNVFMVDLHPVDPGHIDHAKFVATTIWDPVAAYY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029489 [exp]	0	1
					Lus10003695 [exp]	3.5	0.9558
AT1G34050			Ankyrin repeat family protein ...		Lus10026590 [exp]	3.9	0.8671
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10008978 [exp]	4.9	0.9558
					Lus10024734 [exp]	5.1	0.9162
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040724 [exp]	6.0	0.9558
AT4G35310		CPK5, ATCPK5	calmodulin-domain protein kina...		Lus10016191 [exp]	6.3	0.8206
					Lus10020958 [exp]	6.9	0.9558
					Lus10021906 [exp]	7.7	0.9558
AT4G35700	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, ...		Lus10041633 [exp]	8.5	0.9558
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10014436 [exp]	9.2	0.9558

Compare expression of checked genes

Lus10029489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.