Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39980 86 / 1e-20 HXXXD-type acyl-transferase family protein (.1) AT5G67150 86 / 1e-20 HXXXD-type acyl-transferase family protein (.1) AT5G01210 84 / 1e-19 HXXXD-type acyl-transferase family protein (.1) AT5G07860 78 / 1e-17 HXXXD-type acyl-transferase family protein (.1) AT3G50280 76 / 6e-17 HXXXD-type acyl-transferase family protein (.1) AT3G50270 71 / 3e-15 HXXXD-type acyl-transferase family protein (.1) AT5G07850 67 / 5e-14 HXXXD-type acyl-transferase family protein (.1) AT5G07870 67 / 5e-14 HXXXD-type acyl-transferase family protein (.1) AT3G50300 66 / 2e-13 HXXXD-type acyl-transferase family protein (.1) AT5G67160 65 / 5e-13 EPS1 ENHANCED PSEUDOMONAS SUSCEPTIBILTY 1, HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029485 [exp] 124 / 9e-37 AT5G67150 107 / 1e-27 HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 125 / 9e-35 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Lus10031148 [exp] 113 / 2e-30 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10027778 [exp] 80 / 1e-20 AT5G01210 141 / 6e-42 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 86 / 2e-20 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10040222 [exp] 86 / 2e-20 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10035519 [exp] 83 / 2e-19 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 77 / 2e-17 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10024809 [exp] 66 / 2e-13 AT5G42830 442 / 8e-153 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G057001 [exp] 111 / 7e-30 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 110 / 2e-29 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 109 / 4e-29 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 86 / 2e-20 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 86 / 2e-20 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.010G192400 [exp] 85 / 3e-20 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 83 / 2e-19 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 65 / 5e-13 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 65 / 5e-13 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.015G147300 [exp] 63 / 2e-12 AT5G23940 578 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10029492 pacid=23149369 polypeptide=Lus10029492 locus=Lus10029492.g ID=Lus10029492.BGIv1.0 annot-version=v1.0 ATGGAGAGGGGATTCGTCTTTCACGTCGGCCTCCGTTCAAAGCTGCAGCCGAAAATCCCGGAGAACTACTTGGGGAATGCGATCGCAGGATGTGCGGTGG TGTTGAAGGAGAAGGTGTTGCTGAAGGAGAAGGGGATTGGAGACATGGCAGCGGAGATCTACAAGACCGGGTTCACGCTGAGTAGCTCGCCGACGTACGA CATCTACGAGAATGATATCGGATGGGGGAAGCCGGTGGCGGTGAGGAGTGGAGCTGGGAATAAATTTGACGGCAAGTTGACTGTTTTCCCCGGAGTGGAT GAAGGGAGCACGGACGTTGAGATTTGTTTGTCGCCGGAGACAGCCGATCGTCTAGGAATTGATTCCGAATTTATGTCTACAGACGGCGTTTGA
AA sequence Show only first row Show all	>Lus10029492 pacid=23149369 polypeptide=Lus10029492 locus=Lus10029492.g ID=Lus10029492.BGIv1.0 annot-version=v1.0 MERGFVFHVGLRSKLQPKIPENYLGNAIAGCAVVLKEKVLLKEKGIGDMAAEIYKTGFTLSSSPTYDIYENDIGWGKPVAVRSGAGNKFDGKLTVFPGVD EGSTDVEICLSPETADRLGIDSEFMSTDGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10029492 [exp]	0	1

Compare expression of checked genes

Lus10029492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.