Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52820 786 / 0 WD-40 repeat family protein / notchless protein, putative (.1) AT3G49660 124 / 8e-32 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 124 / 2e-31 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 112 / 2e-26 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G16750 104 / 1e-23 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT2G43770 98 / 3e-22 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34460 96 / 2e-21 ELK4, AGB1, ATAGB1 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) AT5G25150 95 / 1e-20 TAF5 TBP-associated factor 5 (.1) AT1G71840 93 / 2e-20 transducin family protein / WD-40 repeat family protein (.1) AT4G15900 93 / 5e-20 PRL1 pleiotropic regulatory locus 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039597 [exp] 944 / 0 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10014674 [exp] 137 / 1e-36 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 137 / 1e-36 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 119 / 4e-30 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 112 / 1e-27 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 106 / 2e-24 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10024972 [exp] 106 / 3e-24 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10004167 [exp] 104 / 9e-24 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10040282 [exp] 101 / 2e-22 AT5G13840 685 / 0.0 FIZZY-related 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058000 [exp] 894 / 0 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.002G051900 [exp] 134 / 2e-35 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 132 / 1e-34 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 114 / 4e-28 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 114 / 9e-28 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.007G050100 [exp] 112 / 2e-26 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G144400 [exp] 109 / 2e-25 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.019G096900 [exp] 99 / 1e-22 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G116900 [exp] 99 / 2e-22 AT1G71840 473 / 6e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.010G012800 [exp] 96 / 6e-21 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0072 [flax] [poplar] Ubiquitin PF08154 [flax] [poplar] NLE NLE (NUC135) domain
Representative CDS sequence Show only first row Show all	>Lus10029493 pacid=23149376 polypeptide=Lus10029493 locus=Lus10029493.g ID=Lus10029493.BGIv1.0 annot-version=v1.0 ATGGAGGCGGAAACAGTAGTGAATAATGTCCTATGCCAGTTCACTGACTCAGAAGGGATCCCCCATGGACCTCCTTTATACCTCCCACAGAATGCCGGCC CTCCTCAGCTTCAACAAATCGTCAATCAGCTTCTAGAGAATAAAGACAAGTTGCCATATGCATTCTACATATCAAATCAGGAGCTCCTCGTGGCTCTGGA AACTTACTTACAGAAAAACAACGTTTCTGTGGAGAAGGTACTGCCCATAATTTATCAGCCACAAGCTGTCTTCCGAATCCGCCCTGTTAGCCGCTGTTCT GCTACTATAGCTGGTCACTCTGAGGCTGTCCTTTCAGTTTCCTTTAGTCCCGATGGACGGCAATTGGCTAGTGGCTCTGGGGATACCACTGTGCGCATTT GGGATCTTAACACCCAGACCCCGATGTTTACTTGTACAGGACACAAAAATTGGGTTCTCTGCATTGCATGGTCACCAGATGGTAAGCATCTTGTGAGTGG GAGCAAGTCTGGAGAGCTTCAGTGTTGGGATCCTCAAACAGGAAATCCATCAGGCAATCAACTTATGGGCCACAAGAAATGGATTACCGGAATCTCTTGG GAACCATTGCACTTAAACTCTCCTTGCACTCGTTTTGTTACTGCTAGCAAAGATGGTGATGCAAGGATTTGGGATACGACGTTGAGAAGAAGTGTTATTT GTCTTAGTGGACACAAGCTTGCTGTAACTTGTGTTAAGTGGGGTGGAGACGGAATAATTTATACTGGGTCGCAGGATTGTACCATCAAAATGTGGGAAAC TACCCAAGGGAAGCTGATTCGTGAGCTGAAGGGTCATGGCCATTGGGTTAACTCTCTTGCTTTGAGTACTGAATACGTTCTCCGTACTGGAGCATTTGAT CATACTGGCAAAACATATTCATCGCCAGAGGAAATGAAAAAGGTTGCTCTAGAAAGATACAACAAAATGAAAGGCAATGGCCCTGAAAGGCTAGTCTCAG GTTCTGATGATTTCACCATGTTCCTCTGGGAACCTGCTGTCAACAAGCACCCAAAAACACGCATGACAGGTCATCAACAGCTTGTAAATCATGTTCACTT TTCACCTGATGGGCAATGGGTGGCTAGTGCATCTTTTGACAAGTCTGTCAAGTTGTGGAATGGCATCACAGGGCAATTTGTTGCGGCTTTTAGAGGCCAC GTAGGTCCTGTTTATCAGATCAGCTGGTCTGCCGATAGTAGGCTTCTTTTGAGTGGGAGCAAAGACTCCACCCTGAAGGTTTGGGATATACGGACCCGCA AGTTGAAGCAAGACCTTCCAGGTCACGAGGATGAGGTATTTGCTGTCGATTGGAGTCCGGATGGTGAGAAAGTAGCTTCTGGAGGCAAAGACCGAGTATT GAAATTATGGATGGGGTAG
AA sequence Show only first row Show all	>Lus10029493 pacid=23149376 polypeptide=Lus10029493 locus=Lus10029493.g ID=Lus10029493.BGIv1.0 annot-version=v1.0 MEAETVVNNVLCQFTDSEGIPHGPPLYLPQNAGPPQLQQIVNQLLENKDKLPYAFYISNQELLVALETYLQKNNVSVEKVLPIIYQPQAVFRIRPVSRCS ATIAGHSEAVLSVSFSPDGRQLASGSGDTTVRIWDLNTQTPMFTCTGHKNWVLCIAWSPDGKHLVSGSKSGELQCWDPQTGNPSGNQLMGHKKWITGISW EPLHLNSPCTRFVTASKDGDARIWDTTLRRSVICLSGHKLAVTCVKWGGDGIIYTGSQDCTIKMWETTQGKLIRELKGHGHWVNSLALSTEYVLRTGAFD HTGKTYSSPEEMKKVALERYNKMKGNGPERLVSGSDDFTMFLWEPAVNKHPKTRMTGHQQLVNHVHFSPDGQWVASASFDKSVKLWNGITGQFVAAFRGH VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTRKLKQDLPGHEDEVFAVDWSPDGEKVASGGKDRVLKLWMG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52820			WD-40 repeat family protein / ...		Lus10029493 [exp]	0	1
AT5G52820			WD-40 repeat family protein / ...		Lus10039597 [exp]	1.0	0.9570
AT1G42440			unknown protein		Lus10030752 [exp]	2.4	0.9306
AT4G35910			Adenine nucleotide alpha hydro...		Lus10018066 [exp]	3.5	0.9038
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10005916 [exp]	4.6	0.9106
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10034355 [exp]	8.5	0.8821
AT4G37190			unknown protein		Lus10011023 [exp]	9.1	0.8062
AT5G48120			ARM repeat superfamily protein...		Lus10011436 [exp]	10.2	0.8992
AT1G24090			RNase H family protein (.1)		Lus10020869 [exp]	13.0	0.8856
AT2G34357			ARM repeat superfamily protein...		Lus10041231 [exp]	14.5	0.8746
AT5G43822			Pentatricopeptide repeat (PPR)...		Lus10030735 [exp]	18.1	0.7906

Compare expression of checked genes

Lus10029493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.