Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014888 [exp] 150 / 5e-47 ND 39 / 7e-04 Lus10032472 [exp] 122 / 1e-36 ND 35 / 0.004 Lus10004093 [exp] 121 / 1e-35 ND 39 / 6e-04 Lus10029656 [exp] 92 / 2e-24 ND / Lus10022142 [exp] 91 / 5e-24 ND / Lus10023773 [exp] 88 / 2e-22 ND / Lus10011629 [exp] 87 / 4e-22 ND 39 / 6e-04 Lus10019608 [exp] 45 / 4e-06 ND / Lus10013815 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF06839 [flax] [poplar] zf-GRF GRF zinc finger
Representative CDS sequence Show only first row Show all	>Lus10029497 pacid=23149380 polypeptide=Lus10029497 locus=Lus10029497.g ID=Lus10029497.BGIv1.0 annot-version=v1.0 ATGGCGTTGAAGGTGAAATTAGGGGTTGTTTGCAGAAATCCAGGAGATAATGGAGAACTGAAACGGTCCCATTCCAAGGACGAGTTTCTCTATGAGGATA ACGATATCGTGCGTCACTGCGGATTGCGTGTGTATAGGAGTATATCTCACACATCCGCCAACCCGGGAAGGAAATTTTTTGGCTCCCCCCGATACGTGTC TCATGCAATTGAGGTCAAGAAAGGATGTGGCTTCTTTGTTTGGTATGAGGTGAAGGTGGCAACAATGAAAGAGAAGGACGGACTAGTGCAGATGATAGAG AGGTTGCAGGTCCATCTACATGAATTGGAACAAACCAACATAGATCTTCATACAAAGATCGGAGGTAGAGTTCTCACGGCCGGAGATGAAGTTTTCTTCC CATCGAGTTTTAGAGCAAAGGAATACGACATTGTTGCTGAGTTGGAGTTGTTGAAATATCGGGTTAGTTTTGCCGGAGAAAAAAGGGTGTTGCGATATGG CATGATGAACTGA
AA sequence Show only first row Show all	>Lus10029497 pacid=23149380 polypeptide=Lus10029497 locus=Lus10029497.g ID=Lus10029497.BGIv1.0 annot-version=v1.0 MALKVKLGVVCRNPGDNGELKRSHSKDEFLYEDNDIVRHCGLRVYRSISHTSANPGRKFFGSPRYVSHAIEVKKGCGFFVWYEVKVATMKEKDGLVQMIE RLQVHLHELEQTNIDLHTKIGGRVLTAGDEVFFPSSFRAKEYDIVAELELLKYRVSFAGEKRVLRYGMMN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029497 [exp]	0	1
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039166 [exp]	5.2	0.6164
					Lus10014735 [exp]	12.0	0.5429
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10000405 [exp]	14.7	0.5975
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Lus10011955 [exp]	19.1	0.6333
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10025481 [exp]	28.1	0.5702
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10042693 [exp]	30.3	0.5431
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10025482 [exp]	37.7	0.5442
					Lus10030050 [exp]	38.8	0.5370
AT2G31760		ATARI10, ARI10	ARABIDOPSIS ARIADNE 10, ARIADN...		Lus10000131 [exp]	51.0	0.4871
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10031206 [exp]	102.2	0.4706

Compare expression of checked genes

Lus10029497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.