Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13710 367 / 5e-128 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT1G20330 120 / 1e-31 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT1G76090 120 / 1e-31 SMT3 sterol methyltransferase 3 (.1) AT4G33120 43 / 0.0001 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G18000 42 / 0.0002 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G48600 42 / 0.0003 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G73600 42 / 0.0003 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G33110 42 / 0.0003 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039600 [exp] 191 / 2e-61 AT5G13710 174 / 2e-54 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Lus10023995 [exp] 122 / 7e-33 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10005625 [exp] 110 / 6e-28 AT1G20330 582 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10009537 [exp] 46 / 2e-05 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10042006 [exp] 44 / 6e-05 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018010 [exp] 44 / 0.0001 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009056 [exp] 42 / 0.0003 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10031348 [exp] 42 / 0.0004 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058600 [exp] 365 / 2e-127 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.001G263700 [exp] 360 / 3e-125 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.016G056000 [exp] 303 / 1e-102 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.005G245800 [exp] 119 / 3e-31 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.002G016300 [exp] 117 / 9e-31 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.013G077000 [exp] 47 / 6e-06 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.012G047400 [exp] 44 / 0.0001 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.015G039000 [exp] 43 / 0.0002 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08498 [flax] [poplar] Sterol_MT_C Sterol methyltransferase C-terminal CL0063 [flax] [poplar] NADP_Rossmann PF02353 [flax] [poplar] CMAS Mycolic acid cyclopropane synthetase
Representative CDS sequence Show only first row Show all	>Lus10029498 pacid=23149366 polypeptide=Lus10029498 locus=Lus10029498.g ID=Lus10029498.BGIv1.0 annot-version=v1.0 ATGTCGAAAGCTGGCGCATTGGATCTTGCTTCTGGTCTTGGTGGCAAGATCGAGAAGAAGGAAGTTCTTTCCGCTGTCGAGCAGTACGAGAAATACCACA GCTTACATGGAGGTGCAGATGAAGAGAGAAAATCCAAATACACTGACATGGTGAATAAGTATTATGACCTGGCAACCAGCTTTTACGAGTTTGGCTGGGG AGAATCGTTCCATTTTGCTCATAGATTCAATGGCGAATCTCTTCGAGAGAGCATCAAGCGGCATGAACACTTTCTTGCCCTGCAACTTGGTCTGAAACCT GGACAAAAGGTATTGGATGTTGGATGTGGAATTGGTGGACCATTGAGAGAAATTGCCAGATTCAGCTTAGTATCAGTGACTGGGTTGAACAATAATGAAT ATCAGATATCCAGAGGAAAGGAATTAAATCGTCTTGCAGGAGTGGACAAGACCTGTGATTTTGTGAAGGCCGAAATAGAGGTTGGTGATGGTCTTCCCGA CATTAGGTCTACCACACAATGTATCGAGGCTCTGGAAAAAGCCGGTTTCGAGGCAAGTCATAGCTTCCACCCCTACTTATGCTGCTTTAAGATGTTGGTG TGGTCAAAGGATCTGGCGAAAGAAGCACCTGTGCCATGGTACTTGCCGTTGGACAAAAGTCACTTCTCCCTCAGTAGCTTCCGTTTGACTGCTGTAGGAA GATTCTTCACTAAAAATCTGGTGAAGACCTTGGAGTATGTAGGACTTGCACCAAAAGGAAGTGAAAGGGTTTCAAATTTCCTGGAGAAGGCTGCTGAGGG ATTAGTTGATGGTGGAAAGTGA
AA sequence Show only first row Show all	>Lus10029498 pacid=23149366 polypeptide=Lus10029498 locus=Lus10029498.g ID=Lus10029498.BGIv1.0 annot-version=v1.0 MSKAGALDLASGLGGKIEKKEVLSAVEQYEKYHSLHGGADEERKSKYTDMVNKYYDLATSFYEFGWGESFHFAHRFNGESLRESIKRHEHFLALQLGLKP GQKVLDVGCGIGGPLREIARFSLVSVTGLNNNEYQISRGKELNRLAGVDKTCDFVKAEIEVGDGLPDIRSTTQCIEALEKAGFEASHSFHPYLCCFKMLV WSKDLAKEAPVPWYLPLDKSHFSLSSFRLTAVGRFFTKNLVKTLEYVGLAPKGSERVSNFLEKAAEGLVDGGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Lus10029498 [exp]	0	1
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Lus10039600 [exp]	1.0	0.9293
AT5G02280			SNARE-like superfamily protein...		Lus10024390 [exp]	3.5	0.8071
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10032965 [exp]	8.1	0.7935
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	8.8	0.7530
AT5G58030			Transport protein particle (TR...		Lus10003634 [exp]	9.6	0.7773
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10039351 [exp]	10.4	0.7410
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10031842 [exp]	10.6	0.7027
AT2G07340		PFD1	PREFOLDIN 1 (.1.2)		Lus10021609 [exp]	12.4	0.7440
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10034350 [exp]	14.7	0.7061
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10041972 [exp]	15.1	0.7256

Compare expression of checked genes

Lus10029498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.