Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17510 1484 / 0 EMB2763 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) AT1G77680 273 / 3e-77 Ribonuclease II/R family protein (.1) AT5G02250 90 / 4e-18 ATMTRNASEII, RNR1, EMB2730 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039601 [exp] 298 / 7e-95 AT2G17510 249 / 2e-77 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Lus10025614 [exp] 286 / 2e-81 AT1G77680 1048 / 0.0 Ribonuclease II/R family protein (.1) Lus10014833 [exp] 274 / 2e-77 AT1G77680 1033 / 0.0 Ribonuclease II/R family protein (.1) Lus10028065 [exp] 158 / 3e-39 AT1G77680 551 / 1e-179 Ribonuclease II/R family protein (.1) Lus10009880 [exp] 108 / 3e-25 AT1G77680 363 / 5e-117 Ribonuclease II/R family protein (.1) Lus10024387 [exp] 82 / 1e-15 AT5G02250 1066 / 0.0 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1) Lus10009879 [exp] 76 / 4e-14 AT1G77680 337 / 9e-107 Ribonuclease II/R family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G059100 [exp] 1595 / 0 AT2G17510 1546 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Potri.002G086400 [exp] 288 / 3e-82 AT1G77680 1062 / 0.0 Ribonuclease II/R family protein (.1) Potri.005G174800 [exp] 281 / 5e-80 AT1G77680 1078 / 0.0 Ribonuclease II/R family protein (.1) Potri.006G086200 [exp] 107 / 1e-23 AT5G02250 1085 / 0.0 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00773 [flax] [poplar] RNB RNB domain
Representative CDS sequence Show only first row Show all	>Lus10029500 pacid=23149429 polypeptide=Lus10029500 locus=Lus10029500.g ID=Lus10029500.BGIv1.0 annot-version=v1.0 ATGTTGCACAGCAAAACTTTTAGCAAGAAGACTAGAGGAGGCAAAGTGCAGAAGCTTGTCAGAGAAGTGTACCTGAGAGATGACATCTACTGTGGAGCTT CTTTTTGCAAAGTCTGCGATACTACTTCTGCTCGTCTCACTGCTTCTGCCTCTACGCTCCTCGTCCTAGACACAAATGTTGTTCTCAATCAGATTGATTT GCTTGAGAATCCGGCTATTGAGGATGTAGTTGTGCTCTCCATTGTTCTTCAAGAGGTTAAGAACAAGAACACTGCTGTATACAATAGAATTAGGGCCCTA TGTAGCAATCCCGCCAGGAGATACTTCGTCTTCTCTAATGAGTTCCACAGGGATACTTATGTTCAGGCCATGAGTGGAGAGACTCCAAATGACCGAAACG ATCGAGCAATTAGGGTGGCTACCAGGTGGTATCAAAAACATCTTGGTGATGTTGCTAGGGTTTTACTTATTACCAACGACAAAGAGAACAAGAGAAAGGC TATCGAAGAGGGCGTTTCTGCTGAGACAATTGAGTCATACGTGCAATCTGTTGGTGAACCGGCATTGCTCGACCTGCTTGTTCAACCTGCTTCAGAAGAT GTGGCTATGGAGGAGGCAGAGGATCTGAGACCTTTAAAGAGGAAAGTCATTTATCCAGAGCATAAGCCCATGTCAGAGATTACTTCTGGTTTGGCCAATG GAATATACCATCAAGGAAAGCTTCGAGTTAACCGTTACAATCCCTTTGAGGCATATGTTGGAAGTGAAAGCATTGGTGATGAAATAGTCATATACGGGCG TGGGAATATGAATAGGGCGTTTGATGGGGATGTTGTGGCAGTGGAATTACTTCCCAAGGATCAATGGCATGAGGAAAAATCTTTATCAATAGTGGATGAA GAGGATGATGAGGAAGATGTTCATTTGGCTCCAAGCAGTGCTGATAATGCTCCAAGATCTACAAATGCTGCACCAGTTGCCAACCCCGTTGTCTCCCATC CATCTGGTCGTGTCATTGGCATCATAAAACGGAATTGGCATTCTTATTGTGGATCTTTGGAGCCTATGCCAATGCCTGCAGGAAGTGGCAGTCTGGTCTA TGCTTTGTTTGTTTCCAAAGATCGTAGAATTCCTAAAATCCGAATTCAAACGCGGCAGGTTGAAAATCTGCTGCACAAGAGAATTATTGTGGCAGTTGAT TCTTGGGATCGTCTGTCACGGTATCCTTCTGGACACTATGTACGAAGTATAGGAGTGATAGGTGACAGAGACACTGAAACTGAGGTTGTCTTGATAGAAA ATGATATAGATGCAAGGCCATTTTCTGCTCAAATTTTGGCATGTTTACCACCCCTTCCCTGGTCAGTTTCTGCTGAAGATTTGGCTAATCCTATTAGAAC AGACTTGCGGCATTTGCGTGTCTTTAGCGTTGATCCACCAGGTTGCAGAGATATCGATGATGCACTACATTGTATGATACTTCCAAATGGAAATTTTGGA GTTGGAGTTCACATTGCTGATGTAACAAACTTTGTTCATGCTGGCACCCCGCTTGACGATGAAGCTACACAAAGAGGCACCTCAGTTTACCTTGTTGAGC GCCGTATTGACATGCTTCCAAAACCTTTGACTGAAGATATATGTTCTCTTCGAGCTGATGTGGAAAGGCTAGCTTTCTCTGTCATTTGGGAAATGACACC TGATGCGGAAATTATTTCGACAAAATATACAAAGAGTGTGATTAAGTCATGTGCTGCGCTGTCCTATGTTGAAGCTCAGGCTAGGATGGATGACAGTCGG TTGATGGATCCAGTAACAGAAGACTTGAGACGTATGAATGCTGTGGCAAAGATTATGAGGCAAAGGCGAATTGACAGAGGAGCACTAACTCTTGCTTCTG CAGAAGTCAAATTTCAAATTGATCCCGAGACTCATGACCCTCTTGATATTGGAATGTACCAGATTCGTGAGGCAAATCAAATGGTAGAAGAGTTCATGCT TGCTGCTAATGTTTCAGTAGCTGAGCAGATCCTTAAACACTTTTCAGACTGTTCGCTGCTAAGGCGTCATCCTAGTCCCACTAAGGATATGCTCGAACCA TTGTTGCGCACAGCTACTTCGATTGGTTTGAACTTGGATGTGTCATCATCAAAAGCACTAGCTGATTCACTTGACCATGCTGTGGGTGATGATCCATATT TCAACAAGCTAATACGTATAATGGCGACCAGATGTATGTCGCAGGCAGTGTATTTCTGCAGCGGCGATCTTAGCCCTCCGGAGTTTCATCATTATGGGCT TGCATCGCCTCTGTACACTCATTTCACGTCACCAATTAGAAGATATGCAGATGTCGTTGTGCACAGGTTACTTGCTGCATCTTTAGGGATATATACACTC CCGATAGTATTCCGCGACAGACCACAGTTAACAAGTATTGCTGACAATCTCAACTACCGGCACAGGAATGCCCAGATGGCTAGCAGAGGTTCTGTAGAGC TCCACACACTCATATATTTCAGAAACCGCCCTACCGACACGGAAGCCAGGATAGTGAAGATAAGGTCCAACGGTTTCATCGTCTTTGTGCCCAAGTACGG CATAGAAGGTCCTGTTTACCTGACCCCGAAAAGCGAGAAAGGCAGTAGCAGTGGTGGAGAATGGTTTGTGGATGAGCAGCAGCAGAAAATCAAGAAGATG GACGGCAGTGTCAGTTACGGAATTCTGCAGGCCGTGAAGATTCACTTGGAGGTAGTCGAGCCCCAGCCAAACCGGCCTAAACTCCAGCTTACCCTCCTCT CCTTATCCTCAACATAA
AA sequence Show only first row Show all	>Lus10029500 pacid=23149429 polypeptide=Lus10029500 locus=Lus10029500.g ID=Lus10029500.BGIv1.0 annot-version=v1.0 MLHSKTFSKKTRGGKVQKLVREVYLRDDIYCGASFCKVCDTTSARLTASASTLLVLDTNVVLNQIDLLENPAIEDVVVLSIVLQEVKNKNTAVYNRIRAL CSNPARRYFVFSNEFHRDTYVQAMSGETPNDRNDRAIRVATRWYQKHLGDVARVLLITNDKENKRKAIEEGVSAETIESYVQSVGEPALLDLLVQPASED VAMEEAEDLRPLKRKVIYPEHKPMSEITSGLANGIYHQGKLRVNRYNPFEAYVGSESIGDEIVIYGRGNMNRAFDGDVVAVELLPKDQWHEEKSLSIVDE EDDEEDVHLAPSSADNAPRSTNAAPVANPVVSHPSGRVIGIIKRNWHSYCGSLEPMPMPAGSGSLVYALFVSKDRRIPKIRIQTRQVENLLHKRIIVAVD SWDRLSRYPSGHYVRSIGVIGDRDTETEVVLIENDIDARPFSAQILACLPPLPWSVSAEDLANPIRTDLRHLRVFSVDPPGCRDIDDALHCMILPNGNFG VGVHIADVTNFVHAGTPLDDEATQRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWEMTPDAEIISTKYTKSVIKSCAALSYVEAQARMDDSR LMDPVTEDLRRMNAVAKIMRQRRIDRGALTLASAEVKFQIDPETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILKHFSDCSLLRRHPSPTKDMLEP LLRTATSIGLNLDVSSSKALADSLDHAVGDDPYFNKLIRIMATRCMSQAVYFCSGDLSPPEFHHYGLASPLYTHFTSPIRRYADVVVHRLLAASLGIYTL PIVFRDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRNRPTDTEARIVKIRSNGFIVFVPKYGIEGPVYLTPKSEKGSSSGGEWFVDEQQQKIKKM DGSVSYGILQAVKIHLEVVEPQPNRPKLQLTLLSLSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Lus10029500 [exp]	0	1
AT5G53620			unknown protein		Lus10008846 [exp]	1.0	0.9564
AT3G62310			RNA helicase family protein (....		Lus10005261 [exp]	1.4	0.9377
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10024327 [exp]	2.8	0.9232
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Lus10042726 [exp]	3.5	0.9260
AT1G79150			binding (.1)		Lus10034234 [exp]	6.5	0.9253
AT1G29940		NRPA2	nuclear RNA polymerase A2 (.1)		Lus10026157 [exp]	6.7	0.9298
AT4G21660			proline-rich spliceosome-assoc...		Lus10011207 [exp]	6.9	0.8923
AT1G55930			CBS domain-containing protein ...		Lus10004777 [exp]	7.1	0.9199
AT3G03340		UNE6	unfertilized embryo sac 6, LUC...		Lus10020225 [exp]	7.3	0.9116
AT1G26370		RID1	RNA helicase family protein (....		Lus10037067 [exp]	7.5	0.9104

Compare expression of checked genes

Lus10029500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.