Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08030 535 / 0 Protein of unknown function, DUF642 (.1.2) AT2G41800 462 / 1e-163 Protein of unknown function, DUF642 (.1) AT2G41810 457 / 2e-161 Protein of unknown function, DUF642 (.1) AT5G11420 416 / 2e-145 Protein of unknown function, DUF642 (.1) AT4G32460 415 / 4e-145 Protein of unknown function, DUF642 (.1.2) AT5G25460 413 / 3e-144 Protein of unknown function, DUF642 (.1) AT1G80240 387 / 4e-134 Protein of unknown function, DUF642 (.1) AT1G29980 322 / 3e-108 Protein of unknown function, DUF642 (.1.2) AT2G34510 322 / 4e-108 Protein of unknown function, DUF642 (.1) AT5G14150 132 / 3e-35 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039602 [exp] 702 / 0 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10029502 [exp] 534 / 0 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2) Lus10016393 [exp] 531 / 0 AT3G08030 490 / 1e-174 Protein of unknown function, DUF642 (.1.2) Lus10016394 [exp] 529 / 0 AT3G08030 469 / 2e-166 Protein of unknown function, DUF642 (.1.2) Lus10029503 [exp] 523 / 0 AT3G08030 465 / 4e-166 Protein of unknown function, DUF642 (.1.2) Lus10019727 [exp] 456 / 1e-161 AT3G08030 392 / 3e-137 Protein of unknown function, DUF642 (.1.2) Lus10031067 [exp] 447 / 2e-157 AT2G41810 478 / 1e-169 Protein of unknown function, DUF642 (.1) Lus10013112 [exp] 436 / 5e-153 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10008080 [exp] 435 / 9e-153 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G263900 [exp] 589 / 0 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.009G058800 [exp] 583 / 0 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.006G050300 [exp] 520 / 0 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 511 / 0 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 508 / 0 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G250100 [exp] 440 / 6e-155 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 422 / 4e-147 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 386 / 3e-133 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 384 / 2e-132 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 332 / 7e-112 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF04862 [flax] [poplar] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Lus10029501 pacid=23149404 polypeptide=Lus10029501 locus=Lus10029501.g ID=Lus10029501.BGIv1.0 annot-version=v1.0 ATGGCTACTGCCTACTACTCGTGTCTTCTTCCATTGGTACTAGTACTAGTGCTCTTCTTCTCCAGTGCCTCCTCTGTTCTGGCTGCCAAACCCTTAGATA GACTGCTGGAAAATGGGAACTTTGAGGAGAGTCCAAACCCACGCTTCCTGAAGAAAACAGTGCTGCAAGGCAAAAACTCGCTTCCAGGATGGGAAATCAA TGGATTGGTGGAGTACATCTCTGGAGGGCCACAGCCTGGAGGGATGTACTTCCCAGTGGCTCATGGTGTTCATGCTGTTAGGCTTGGTAATGAGGCCTAC ATCTCACAGTCCATGTCTGTAAAGCCAGGCTCTTTGTATGCTCTCACTTTTGGTGCGTCCAGAACTTGTGCTCAGAATGAGGTCCTCAGGGTTTCAGTCC CACCCCAGACTGGAGATCTGCCTCTGCAAACTTTGTACTCAAGCAATGGTGGAGACACTTATGCTTGGGGGTTTAGAGCTACCACTAATGTCGTCAAAGT TACTTTCCATAACCCTGGTGTCCAAGAGGACCCTGCTTGTGGCCCTCTCATTGATGCTGTTGCCATTAAGGAGCTCTTCCCTCCTTTCCCCACTAGAGGT AACTTGGTGAAGAACCCGGGATTTGAGGAAGGGCCACACAGGCTGCTGAACACATCAAGTGGAGTCCTCCTCCCTCCAAAGCAAGAGGATGCAACATCAC CACTCCCGGGATGGATCATCGAGTCACTCAAGGCCGTCAAGTTCATCGATGCAAAGCACTTCAATGTCCCATTCGGGCTGGCTGCGGTGGAGCTCGTTGC TGGAAGGGAGAGTGCCATTGCTCAGATTATCAGGACCATCCCAAACAAAGCATACAGCTTGACATTCTCAGTAGGAGATGCCAAGAACGGGTGCCACGGA TCCATGATGGTGGAGGCTTTTGCTGCCAAGGACACCATGAAGGTTCCGTTTGTTTCGGAAGGGAAAGGGAAGTTCAAGACGGTGAGCTTCAAGTTCACAG CGGTAACAGCAAGGACAAGAATCACTTTCTACAGCTCGTATTACCATACAAGGGCTGATGATTTCGGGTCTCTGTGTGGACCAATTGTTGACGAAGTTAG AGTTGTCCCTGTTTAA
AA sequence Show only first row Show all	>Lus10029501 pacid=23149404 polypeptide=Lus10029501 locus=Lus10029501.g ID=Lus10029501.BGIv1.0 annot-version=v1.0 MATAYYSCLLPLVLVLVLFFSSASSVLAAKPLDRLLENGNFEESPNPRFLKKTVLQGKNSLPGWEINGLVEYISGGPQPGGMYFPVAHGVHAVRLGNEAY ISQSMSVKPGSLYALTFGASRTCAQNEVLRVSVPPQTGDLPLQTLYSSNGGDTYAWGFRATTNVVKVTFHNPGVQEDPACGPLIDAVAIKELFPPFPTRG NLVKNPGFEEGPHRLLNTSSGVLLPPKQEDATSPLPGWIIESLKAVKFIDAKHFNVPFGLAAVELVAGRESAIAQIIRTIPNKAYSLTFSVGDAKNGCHG SMMVEAFAAKDTMKVPFVSEGKGKFKTVSFKFTAVTARTRITFYSSYYHTRADDFGSLCGPIVDEVRVVPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08030			Protein of unknown function, D...		Lus10029501 [exp]	0	1
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10039573 [exp]	2.2	0.9086
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10004918 [exp]	2.8	0.8945
AT3G49050			alpha/beta-Hydrolases superfam...		Lus10039240 [exp]	3.7	0.8409
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10005315 [exp]	4.2	0.8893
AT4G18060			SH3 domain-containing protein ...		Lus10004584 [exp]	4.7	0.8597
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10011290 [exp]	4.9	0.8873
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10027467 [exp]	9.2	0.8865
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10018122 [exp]	9.4	0.8692
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10017339 [exp]	10.2	0.8082
AT3G26935			DHHC-type zinc finger family p...		Lus10035177 [exp]	10.6	0.8319

Compare expression of checked genes

Lus10029501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.