Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08030 474 / 2e-168 Protein of unknown function, DUF642 (.1.2) AT2G41800 420 / 6e-147 Protein of unknown function, DUF642 (.1) AT2G41810 417 / 9e-146 Protein of unknown function, DUF642 (.1) AT5G25460 380 / 4e-131 Protein of unknown function, DUF642 (.1) AT5G11420 377 / 4e-130 Protein of unknown function, DUF642 (.1) AT4G32460 377 / 7e-130 Protein of unknown function, DUF642 (.1.2) AT1G80240 356 / 1e-121 Protein of unknown function, DUF642 (.1) AT2G34510 303 / 2e-100 Protein of unknown function, DUF642 (.1) AT1G29980 300 / 2e-99 Protein of unknown function, DUF642 (.1.2) AT5G14150 132 / 4e-35 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029503 [exp] 581 / 0 AT3G08030 465 / 4e-166 Protein of unknown function, DUF642 (.1.2) Lus10029501 [exp] 536 / 0 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10016393 [exp] 535 / 0 AT3G08030 490 / 1e-174 Protein of unknown function, DUF642 (.1.2) Lus10039602 [exp] 534 / 0 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10016394 [exp] 523 / 0 AT3G08030 469 / 2e-166 Protein of unknown function, DUF642 (.1.2) Lus10019727 [exp] 447 / 5e-158 AT3G08030 392 / 3e-137 Protein of unknown function, DUF642 (.1.2) Lus10013112 [exp] 392 / 1e-135 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10005474 [exp] 390 / 6e-135 AT5G11420 581 / 0.0 Protein of unknown function, DUF642 (.1) Lus10008080 [exp] 390 / 6e-135 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058800 [exp] 510 / 0 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.001G263900 [exp] 509 / 0 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.006G050300 [exp] 462 / 3e-163 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 459 / 5e-162 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 447 / 2e-157 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G250100 [exp] 385 / 2e-133 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 376 / 1e-128 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 357 / 6e-122 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 357 / 9e-122 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 314 / 6e-105 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF04862 [flax] [poplar] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Lus10029502 pacid=23149352 polypeptide=Lus10029502 locus=Lus10029502.g ID=Lus10029502.BGIv1.0 annot-version=v1.0 ATGTCGACGACCACTACCCGTTCCTTCTACTGCCTTGTATCATCACTATTCCTCTTCAATACTGCCTACGTTATGGCTGCTTCCACCAACCACGTGGATG GGTTGTTGAACAACGGAAACTTCGAGCACAAGCCACATCCAAGAAACGTGAAGAAGACGGTGGTGCAGGGCAAGAAATCGATACCCGGTTGGGAAATCGA GGGGCTGGTGGAGTTCATATCCGGCGGACCACAACCAGGAGGGATGTTCTTCCCGTTGGCCCAAGGAGCTCACGCGGTGAGGCTAGGGAACGAGGCGTCC ATCTCGCAGACCATAAGGGTCAACCCTGGGTCCCTCTACGCCCTATCTTTCGTGGCCTCAAGGACTTGTGCTCAGAACGAAGTGTTGACTGTCTCGGTTC CGAATCAATCGGGTGATCTTCCTCTACAGACGTTGTACTGCATGGACGGATGTGACACTTACGCTTGGGGGTTCAAGCCCAACACAAGTGTAGTTAAGGT TACTTTCCATAACCCTGGGATCCAAGAGGACCCCACCTGCGGCCCTCTTCTTGATGCCGTCGCTATTAAGGAGCTCCTCCCTACATACCCCACCAGAGAT AATATGGTGAGGAACGCTGGGTTCGAGGAAGGCCCCGGACGGCCGGTTCTGAACTGTTCAAGCGGAATCCTTTTACCACCAAAGCAAGAAGACATTGTAT CTCCACTTCCTGGCTGGATCATCGAGTCCCTCAAGGCAGTCAAATACATCAACGCCAAGCACTTCAACGTCCCATTCGGCAAGTCCGCTGTGGAGCTGGT GGGCGGACGGGAGAGCGCCATCGCTCAGATCATCCGCACAATTCCGAACTGGCTTTACAGACTCGCGTTCACGGTGGGAGATGCGAAGAACGAGTGCCAC GGTTCAATGACCGTGGTGGCCCTGGCGGGCAAGGATGTTTTCAACGTTCCGTTCGTTTCCAGCAGCAAAGGGCATTCCAAGACGGTGAGTTTCAAGTTCA GGGCGATTTCCAAGAGGACTAGGATCACTTTCTTCAGTTCGTATTACCATACCAGGACGGATGATATCGTGTCGTTGTGTGGGCCCGTTGTTGATCAAGT AAAGGTGTTCCCTGTTCGGCGTTGA
AA sequence Show only first row Show all	>Lus10029502 pacid=23149352 polypeptide=Lus10029502 locus=Lus10029502.g ID=Lus10029502.BGIv1.0 annot-version=v1.0 MSTTTTRSFYCLVSSLFLFNTAYVMAASTNHVDGLLNNGNFEHKPHPRNVKKTVVQGKKSIPGWEIEGLVEFISGGPQPGGMFFPLAQGAHAVRLGNEAS ISQTIRVNPGSLYALSFVASRTCAQNEVLTVSVPNQSGDLPLQTLYCMDGCDTYAWGFKPNTSVVKVTFHNPGIQEDPTCGPLLDAVAIKELLPTYPTRD NMVRNAGFEEGPGRPVLNCSSGILLPPKQEDIVSPLPGWIIESLKAVKYINAKHFNVPFGKSAVELVGGRESAIAQIIRTIPNWLYRLAFTVGDAKNECH GSMTVVALAGKDVFNVPFVSSSKGHSKTVSFKFRAISKRTRITFFSSYYHTRTDDIVSLCGPVVDQVKVFPVRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	0	1
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	1.7	1.0000
					Lus10004437 [exp]	2.4	1.0000
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	3.0	1.0000
AT1G30920			F-box family protein (.1)		Lus10006734 [exp]	3.0	0.9819
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	4.0	1.0000
					Lus10021739 [exp]	4.5	1.0000
					Lus10039674 [exp]	4.9	1.0000
AT1G30700			FAD-binding Berberine family p...		Lus10031080 [exp]	7.0	1.0000
AT3G44220			Late embryogenesis abundant (L...		Lus10034175 [exp]	7.1	0.9771
AT2G26490			Transducin/WD40 repeat-like su...		Lus10032868 [exp]	7.5	1.0000

Compare expression of checked genes

Lus10029502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.