Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08030 454 / 5e-162 Protein of unknown function, DUF642 (.1.2) AT2G41800 400 / 9e-140 Protein of unknown function, DUF642 (.1) AT2G41810 399 / 2e-139 Protein of unknown function, DUF642 (.1) AT5G11420 348 / 2e-119 Protein of unknown function, DUF642 (.1) AT4G32460 348 / 2e-119 Protein of unknown function, DUF642 (.1.2) AT5G25460 344 / 8e-118 Protein of unknown function, DUF642 (.1) AT1G80240 327 / 6e-111 Protein of unknown function, DUF642 (.1) AT1G29980 275 / 2e-90 Protein of unknown function, DUF642 (.1.2) AT2G34510 275 / 4e-90 Protein of unknown function, DUF642 (.1) AT5G14150 116 / 1e-29 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029502 [exp] 560 / 0 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2) Lus10016393 [exp] 516 / 0 AT3G08030 490 / 1e-174 Protein of unknown function, DUF642 (.1.2) Lus10029501 [exp] 509 / 0 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10039602 [exp] 507 / 0 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10016394 [exp] 486 / 1e-173 AT3G08030 469 / 2e-166 Protein of unknown function, DUF642 (.1.2) Lus10019727 [exp] 464 / 1e-165 AT3G08030 392 / 3e-137 Protein of unknown function, DUF642 (.1.2) Lus10031067 [exp] 367 / 3e-126 AT2G41810 478 / 1e-169 Protein of unknown function, DUF642 (.1) Lus10035451 [exp] 364 / 4e-125 AT2G41810 476 / 1e-168 Protein of unknown function, DUF642 (.1) Lus10013112 [exp] 362 / 1e-124 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G263900 [exp] 481 / 7e-172 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.009G058800 [exp] 478 / 2e-170 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.006G050300 [exp] 440 / 2e-155 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 435 / 1e-153 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 429 / 3e-151 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G250100 [exp] 355 / 3e-122 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 349 / 5e-119 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 327 / 1e-110 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 325 / 9e-110 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 290 / 5e-96 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF04862 [flax] [poplar] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Lus10029503 pacid=23149457 polypeptide=Lus10029503 locus=Lus10029503.g ID=Lus10029503.BGIv1.0 annot-version=v1.0 ATGAAGAAGACGGTGGTCTTGGGAAAGAAATCGATACCCGGTTGGGAAATCGAGGGGCTGGTGGAGTTCATCTCCGGCGGACCACAGCCCAGAGGAATGT TCTTCCCGGTGGCCCACGGGGTCCACGCCGTACGGCTGGGGAACGATGCATCCATCTCTCAAACCATAGCGGTCAAACCGGGGTCTGTTTACGCCCTCTC CTTCGTGGCCTCGAGGACTTGTGCTCAGAACGAAGTGTTGACAGTTTCCGTCCCCAACCAATCCGGCGATCTACCGCTTCAAACGTTGTACTGCAGCAAC GGCGGAGACACTTACGCTTGGGGGTTTAAGCCTAACACAAGCCTTGTTAAGGTTACTTTCCATAACCCTGGGGTTCAAGAAGATCCTACTTGCGGCCCTC TTGTTGACGCTGTTACTATCAAGGAGATCCTCCCTACTTACCCCACCAGAGATAACTTAGTGAGGAATGCTGGATTCGAGGAAGGACCCAAAAGGCCACT TCTCAACGGATCAAACGGAATCCTTCTGCCACCAAAGCAAGAAGACATTGTATCCCCACTCCCCGGTTGGATCATCGAGTCCCTCAAGGCAGTCAAATAC ATCGACGCCAAGCACTACAACGTCCCGTCTGGAAACTCTGCCGTGGAGCTCGTAGTCGGACGAGAGAGCGCCATCGCTCAGATCATACGCACCGTTCCGA ACAAGGTCTACAGGCTTACCTTCACCGTGGGAGATGCCAAGAACAAGTGCCACGGTGACATGACTGTCGTGGCCTTCGCGGCCAAGGAAGTTTTCAACGT TCCGTTTGTTTCGAACGGCAAGGGGTACTTCAAGACGGTGAGTTTCAAGTTCAAGGCAATCTCGAAGAGGACGAGGATCACTTTCTTCAGCTCGCATTAC CATACTAGGACGGATGATTTCGTGTCCTTGTGTGGGCCTGTTGTTGATGATGTCAAGGTTTTCCCTGTTAGAGTTTGA
AA sequence Show only first row Show all	>Lus10029503 pacid=23149457 polypeptide=Lus10029503 locus=Lus10029503.g ID=Lus10029503.BGIv1.0 annot-version=v1.0 MKKTVVLGKKSIPGWEIEGLVEFISGGPQPRGMFFPVAHGVHAVRLGNDASISQTIAVKPGSVYALSFVASRTCAQNEVLTVSVPNQSGDLPLQTLYCSN GGDTYAWGFKPNTSLVKVTFHNPGVQEDPTCGPLVDAVTIKEILPTYPTRDNLVRNAGFEEGPKRPLLNGSNGILLPPKQEDIVSPLPGWIIESLKAVKY IDAKHYNVPSGNSAVELVVGRESAIAQIIRTVPNKVYRLTFTVGDAKNKCHGDMTVVAFAAKEVFNVPFVSNGKGYFKTVSFKFKAISKRTRITFFSSHY HTRTDDFVSLCGPVVDDVKVFPVRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08030			Protein of unknown function, D...		Lus10029503 [exp]	0	1
AT5G63180			Pectin lyase-like superfamily ...		Lus10036946 [exp]	1.7	0.9701
AT1G02460			Pectin lyase-like superfamily ...		Lus10038059 [exp]	5.1	0.9316
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021048 [exp]	10.3	0.8636
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10000624 [exp]	13.7	0.8569
AT5G51490			Plant invertase/pectin methyle...		Lus10038919 [exp]	14.0	0.9221
AT2G23630		SKS16	SKU5 similar 16 (.1)		Lus10000837 [exp]	16.0	0.9087
AT1G63940		MDAR6	monodehydroascorbate reductase...		Lus10028763 [exp]	17.3	0.9133
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10037309 [exp]	17.4	0.8741
					Lus10014855 [exp]	21.2	0.8175
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10005572 [exp]	21.7	0.8386

Compare expression of checked genes

Lus10029503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.