Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52080 822 / 0 CHX28 cation/hydrogen exchanger 28 (.1) AT2G13620 366 / 2e-114 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT5G41610 315 / 4e-95 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT1G05580 297 / 4e-88 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT3G17630 285 / 5e-84 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT2G31910 271 / 7e-79 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT4G23700 259 / 1e-74 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT3G53720 248 / 1e-70 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT1G16380 248 / 1e-70 ATCHX1 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1) AT1G06970 229 / 6e-64 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016403 [exp] 1332 / 0 AT3G52080 856 / 0.0 cation/hydrogen exchanger 28 (.1) Lus10019716 [exp] 1320 / 0 AT3G52080 857 / 0.0 cation/hydrogen exchanger 28 (.1) Lus10035312 [exp] 343 / 5e-105 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 338 / 2e-103 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017540 [exp] 318 / 8e-96 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10032332 [exp] 317 / 1e-95 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10017541 [exp] 267 / 3e-76 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10024132 [exp] 259 / 5e-75 AT1G16380 641 / 0.0 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1) Lus10024131 [exp] 254 / 2e-73 AT1G79400 580 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G059400 [exp] 1039 / 0 AT3G52080 803 / 0.0 cation/hydrogen exchanger 28 (.1) Potri.001G264600 [exp] 942 / 0 AT3G52080 710 / 0.0 cation/hydrogen exchanger 28 (.1) Potri.007G105200 [exp] 352 / 5e-109 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.001G096320 [exp] 342 / 3e-105 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 340 / 7e-105 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.003G134900 [exp] 310 / 3e-93 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G004800 [exp] 298 / 1e-88 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G005200 [exp] 293 / 5e-87 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.003G194200 [exp] 292 / 6e-87 AT1G79400 625 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.004G131300 [exp] 280 / 5e-82 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10029506 pacid=23149364 polypeptide=Lus10029506 locus=Lus10029506.g ID=Lus10029506.BGIv1.0 annot-version=v1.0 ATGGATGACAATCTATCTTTCAATAATGTCACCAATGCTGCTGTCAAGGGTGATGGTAATCAAGAATCAACCTGTCAAAACTTCATCACATACGCAGTTA AAAACGAGCCTGGCAAGATCATTGGTATCGTTCTCACTTATGTTTTGAGTTATCTCATTCACCACCTCCTTAAGCCTCTCTCCCAACCACGAATTGCTTC TGATATATCGATAGGATTAATTATTGGGAACATACAATGGATTCGCAACGCTCTCGATCCGAAATTCATCGAGACACTAAATTTCATAGCGGAATTCGGT ATGATATGCCATGTATTCGCTCTAGGGTTAGAGATGAACCCACGTATGATTTTCAAGGCACCATCTCAGGAAGCCATGGTAGCCTATGCAGGAATGATTT CAACCTTCATTTTAGTTAATGGGGTGACACCATTTCTGCACTATACAAACAGACCAATGATCTTTGGTTTCACCATTGCTTTGTCCATGGCCCTGTCCGG GACCGGTTCTCCTATCTTAACAAGGATTATAACAAACCTTAAAATAGGCAAATCCGACATCGGGAAGCTTGTGATTGCAGCTGGACTCCATTCCGATCTC GTCTCCATGTTTCTCTGTTGCTTCGGATTTCTATTCGGACCGACATATCAAATGGAATTACCGACCCGTCTCACCAAGGCCTTCACGATGGGTGCTGCGT TGATTCTTCAAACGGTTTTCACCGCCAAGATTTCGCCCATTTTCATAAACTGGGTTAACAATGAGAACCCAGAAGGGAAACCGATGAAAGGTTCACACTT GGTGCTTACGATTGCTTTCATGGTTATCGTTTGTAGTGCATCCCCGATGTATGGATATAACCCGATTCTTAGTGCATTTATGGCTGGAATCTTTCTCCCT AATGAAGGTAGGGTGTCCAAATGGGCTGTTGGAAAGATCCACTATCTTTTGACGACTGTTTTTTATCCAGTTTTCTTCTTCTGGATGGGGATTCATGCTA ATGTCAGGGAGTTTCAAGGTCGGCATTGGATTACTTGGGCAAGACTTGTTGTTCTTTTACTAGTAGCTTTGTTTGGGAAAGTTCTTGGGACAGTTGTTTG TGGAGCGATCTTGGGTTTCCATTGGCGTGAATCTTTTGAGCTTGGGCTCCTCCTAACAGTAAAGGGTCATTTCCATGTGTTTATTGCAGTAGTTGGTCAT GTGTACAAAATCATACCTACTTCAACAAGTATCATGATCATTTTTGCAATCTTCCTCACAATAGTACAAGCTCCATCGGTAGTGATGCAAATCATCAAAC GTGCTAGAAGACGTGCCCCGACTCATCACAGGTCGCTTCAACTGCTCGAGTCGACGAGCGAATTTCGTGTCCTGTTGTGTCTTCACGGACCTCATAATAT CAACTCGACAATAAACTTTATGGAGATAAGCCGAGGAGCACCCCATCCTGGAATTATGGTGTTCGTAACTGACATGGTTGAACTCACGGACCAAATAGCA GCCACATTGGTGCAGAGCGATGGAGTGGATACTGTGACCGTGACTGATAAGAATGTGACGGAAATGAGAGATCGCATATCCAACAACGTTCAAACTTACA TCGATGAAAGCGGCGAAGGCATTTCGATCAAAAGGATGCTTGCTCTTTCGACATTCAATGGCATGGCCCAAGACATTTTCACATTAGGAGAGGACTTAAT GGCTACCTTCATCATACTTCCGTTTCACAAGGCCCAAAAACCAGACGGTACTCTTGATGGCGGGAATCCCGGGTTTAGGTATGTAAATCGTAAGGTACTG AGGAATGCTCCATGTTCTGTTGGAATTCTGGTGGATAGAGGTTTTGGGGCACTGGAAAATATATCAAAGATGTCAAGGTCCGCTCTTATAGCAGTTATCT TTATTGGTGGGAGGGACGATAGAGAAGCACTCGCATACGCAGGTAGGGTGGCGAGGCATCCAGGAGTGAAGCTGACGGTGTTAAGGTTCCTACTCGACGA TAGTTCGGAAGTTACGAGAAGAGGAAATTACAACAGAGTGAATGTGGCGGAGAAGGAAGAAGAAGTTAAGCTTGACGATGAATGTTTTGCTCACTTCTAC GAGACGCATGTCGCAACAGGGTACGTTGCATATATGGAGAAACATCTGGCGAATTCGGCTGCAACTTATTCGAATTTAAGATCGTTAGAAGGGCAGTACA CACTTATCATTGTAGGAAGAGGGGGACGAGTAGATTCAATACTGACGATTGGGATGAATGATTGGCAACAATGCCCAGAATTAGGACCCGTAGGCGACGT CCTTTCTGGTTCTGATCTCGCACAGACGACCTCTGTTTTGATCATCCAACAACACAATCTTAAAGGAGAATTGAATGGGGTAGATGACGATTTCAATATA ATGTAA
AA sequence Show only first row Show all	>Lus10029506 pacid=23149364 polypeptide=Lus10029506 locus=Lus10029506.g ID=Lus10029506.BGIv1.0 annot-version=v1.0 MDDNLSFNNVTNAAVKGDGNQESTCQNFITYAVKNEPGKIIGIVLTYVLSYLIHHLLKPLSQPRIASDISIGLIIGNIQWIRNALDPKFIETLNFIAEFG MICHVFALGLEMNPRMIFKAPSQEAMVAYAGMISTFILVNGVTPFLHYTNRPMIFGFTIALSMALSGTGSPILTRIITNLKIGKSDIGKLVIAAGLHSDL VSMFLCCFGFLFGPTYQMELPTRLTKAFTMGAALILQTVFTAKISPIFINWVNNENPEGKPMKGSHLVLTIAFMVIVCSASPMYGYNPILSAFMAGIFLP NEGRVSKWAVGKIHYLLTTVFYPVFFFWMGIHANVREFQGRHWITWARLVVLLLVALFGKVLGTVVCGAILGFHWRESFELGLLLTVKGHFHVFIAVVGH VYKIIPTSTSIMIIFAIFLTIVQAPSVVMQIIKRARRRAPTHHRSLQLLESTSEFRVLLCLHGPHNINSTINFMEISRGAPHPGIMVFVTDMVELTDQIA ATLVQSDGVDTVTVTDKNVTEMRDRISNNVQTYIDESGEGISIKRMLALSTFNGMAQDIFTLGEDLMATFIILPFHKAQKPDGTLDGGNPGFRYVNRKVL RNAPCSVGILVDRGFGALENISKMSRSALIAVIFIGGRDDREALAYAGRVARHPGVKLTVLRFLLDDSSEVTRRGNYNRVNVAEKEEEVKLDDECFAHFY ETHVATGYVAYMEKHLANSAATYSNLRSLEGQYTLIIVGRGGRVDSILTIGMNDWQQCPELGPVGDVLSGSDLAQTTSVLIIQQHNLKGELNGVDDDFNI M

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10029506 [exp]	0	1
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10016595 [exp]	2.8	0.8931
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10015026 [exp]	4.9	0.8811
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10010868 [exp]	4.9	0.8375
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10035131 [exp]	7.7	0.8759
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10007975 [exp]	8.9	0.8732
AT5G37790			Protein kinase superfamily pro...		Lus10017631 [exp]	10.6	0.8289
AT5G63180			Pectin lyase-like superfamily ...		Lus10006241 [exp]	11.0	0.8470
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035585 [exp]	11.4	0.8339
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10015258 [exp]	11.4	0.8649
AT1G13970			Protein of unknown function (D...		Lus10000174 [exp]	11.8	0.8513

Compare expression of checked genes

Lus10029506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.