Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63510 618 / 0 FMN-linked oxidoreductases superfamily protein (.1.2) AT5G47970 582 / 0 Aldolase-type TIM barrel family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039605 [exp] 734 / 0 AT3G63510 619 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10019714 [exp] 692 / 0 AT3G63510 596 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10016405 [exp] 651 / 0 AT3G63510 575 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10016407 [exp] 422 / 6e-148 AT3G63510 374 / 6e-130 FMN-linked oxidoreductases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G264900 [exp] 670 / 0 AT3G63510 607 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Potri.009G059900 [exp] 632 / 0 AT3G63510 591 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01207 [flax] [poplar] Dus Dihydrouridine synthase (Dus)
Representative CDS sequence Show only first row Show all	>Lus10029508 pacid=23149399 polypeptide=Lus10029508 locus=Lus10029508.g ID=Lus10029508.BGIv1.0 annot-version=v1.0 ATGTTGAAGTTGTCTGGGATAGCTTCATTCACTCCATTCCAATGTGTTCCTCTGAAAAGACCTAGCATAATATTCCCCTATGATATATGTTTGAAGACTT CATCCAGCATTAGAACCTTGTCCACATACAATGCAAAGCGAGAGTTGCATACAAAATCTGACAAGGTTGTTGCGAAATATCATCCTCCTCTCTTTAGTGT TGCTCCAATGATGGACTGGACAGACAACCATTACAGGATTCTTGCTAGGTTCATATCTAAACATGCGTGGCTTTATACAGAGATGCTCACAGCTTCCACA ATTGTTTCCCATGAGGGAAATCTGGACAGGTTTTTGGCTTACTCTCCGGAGCAACATCCCATTGTACTTCAAATTGGAGGAAGTAATTTAGATAGCCTTG CTAAAGCAACAAAACTTGCCAATGCATATGACTATGATGAGATTAACCTCAATTGTGGTTGCCCCAGTCCAAAGGTAGCAGGACACGGCTGTTTTGGCGT CAGTCTTATGCTTGATCCAAAGCTTGTTAGTGAGGCTATTTCGGTAATTGCTGCCAATACTGATGTTCCTGTCACTGTTAAATGCCGGATTGGAGTAGAC GATCATGATTCATATAGTGAGCTTTGTGATTTTGTATATAAAGTGTCAACTCTGTCTCCCACTGGGCATTTTATAATACATTCGCGGAAGGCTTTGCTCA ATGGCATCAGCCCTGCGGACAACAGAAGGATCCCTCCACTGAAATATGAGTACTATTTTGCTCTGTTGCGTGATTTCCCCGACTTAAAGTTTACAATTAA TGGAGGAATTACCTCTACTGGTGAGGTGAATGCAGCACTGAAGGCAGGAGCACATGGTGTAATGGTTGGGCGTGCTGCTTATAACAATCCTTGGAATGTC TTGGGACCTGTTGATACTTTAATATATGGGGCACCGGCAAGTGGTCTTACACGTCGTCAGGTTCTTGAGAAGTATCAACTGTATGGTGATGCCATTCTTG GAACCTATGGAAATAATAGGCCTAATGTACGAGACGTTATAAAGCCTTTACTAGGATTGTTTCATTCGGAGTCTGGGAACAGCCTTTGGAAACGAAAATC AGATGCCGCATTCCAGCACTGCAAGACGATTAAATCATTTTTCGAGGAAACACTAGTAGCAATTCCTGACAGCGTCATGGATTCTCCAATTGTTGAAGCA CCATCAGGGCGTGAAGATCTTTTTACTAATGTGGAAGGAATTCTCCCACCTCCATATGAATCTAGAGAAGAAGAGGTGGTTTGTGCTTAA
AA sequence Show only first row Show all	>Lus10029508 pacid=23149399 polypeptide=Lus10029508 locus=Lus10029508.g ID=Lus10029508.BGIv1.0 annot-version=v1.0 MLKLSGIASFTPFQCVPLKRPSIIFPYDICLKTSSSIRTLSTYNAKRELHTKSDKVVAKYHPPLFSVAPMMDWTDNHYRILARFISKHAWLYTEMLTAST IVSHEGNLDRFLAYSPEQHPIVLQIGGSNLDSLAKATKLANAYDYDEINLNCGCPSPKVAGHGCFGVSLMLDPKLVSEAISVIAANTDVPVTVKCRIGVD DHDSYSELCDFVYKVSTLSPTGHFIIHSRKALLNGISPADNRRIPPLKYEYYFALLRDFPDLKFTINGGITSTGEVNAALKAGAHGVMVGRAAYNNPWNV LGPVDTLIYGAPASGLTRRQVLEKYQLYGDAILGTYGNNRPNVRDVIKPLLGLFHSESGNSLWKRKSDAAFQHCKTIKSFFEETLVAIPDSVMDSPIVEA PSGREDLFTNVEGILPPPYESREEEVVCA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63510			FMN-linked oxidoreductases sup...		Lus10029508 [exp]	0	1
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10002442 [exp]	5.5	0.8522
AT1G26090			P-loop containing nucleoside t...		Lus10034381 [exp]	7.3	0.8204
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10019703 [exp]	8.7	0.8285
AT3G63510			FMN-linked oxidoreductases sup...		Lus10039605 [exp]	9.0	0.8360
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10023283 [exp]	15.5	0.8404
AT1G04900			Protein of unknown function (D...		Lus10007135 [exp]	17.7	0.7486
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10016416 [exp]	19.4	0.8252
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10041840 [exp]	24.7	0.7588
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10014728 [exp]	24.9	0.7810
AT5G23690			Polynucleotide adenylyltransfe...		Lus10016719 [exp]	28.5	0.8181

Compare expression of checked genes

Lus10029508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.