Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07970 465 / 8e-162 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1) AT3G57510 421 / 1e-144 ADPG1 Pectin lyase-like superfamily protein (.1) AT2G41850 417 / 5e-143 ADPG2, PGAZAT ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) AT1G80170 367 / 3e-123 Pectin lyase-like superfamily protein (.1) AT1G70500 351 / 7e-117 Pectin lyase-like superfamily protein (.1) AT1G23460 335 / 2e-110 Pectin lyase-like superfamily protein (.1) AT1G56710 304 / 6e-99 Pectin lyase-like superfamily protein (.1) AT5G14650 292 / 2e-94 Pectin lyase-like superfamily protein (.1) AT2G43890 288 / 4e-93 Pectin lyase-like superfamily protein (.1) AT3G15720 288 / 1e-92 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019711 [exp] 557 / 0 AT3G07970 461 / 1e-160 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10042371 [exp] 460 / 2e-159 AT3G07970 432 / 5e-149 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10026299 [exp] 452 / 8e-158 AT3G07970 418 / 3e-145 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10036084 [exp] 329 / 3e-108 AT1G80170 491 / 2e-172 Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 315 / 2e-102 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029139 [exp] 292 / 2e-94 AT1G23460 574 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032875 [exp] 285 / 9e-92 AT3G15720 342 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10002124 [exp] 283 / 2e-91 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1) Lus10002125 [exp] 283 / 4e-91 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G060400 [exp] 554 / 0 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.006G052700 [exp] 484 / 4e-169 AT3G07970 449 / 7e-156 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.016G054800 [exp] 448 / 4e-155 AT2G41850 421 / 7e-145 ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) Potri.001G171900 [exp] 382 / 3e-129 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1) Potri.001G463000 [exp] 339 / 3e-112 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G211900 [exp] 338 / 1e-111 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G159000 [exp] 334 / 5e-110 AT1G23460 667 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.015G088600 [exp] 304 / 4e-99 AT1G70500 323 / 1e-106 Pectin lyase-like superfamily protein (.1) Potri.009G169100 [exp] 301 / 1e-97 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G006400 [exp] 293 / 2e-95 AT1G05660 472 / 1e-166 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10029511 pacid=23149466 polypeptide=Lus10029511 locus=Lus10029511.g ID=Lus10029511.BGIv1.0 annot-version=v1.0 ATGTACTCAAGCTTTATACTTTCTTTCTGCCTCCTTTTAGCCTCCTTATGCTGCTTTCTCTCTTGTTTTGCCTCCTCTTCCCCACAAAACAACAGCAAGC CACTACTCTTCAGCCATGGAAATAACCACCCATTAAGCACATCAGCTAATTACCGTTTCCATGGAATGCTAAGCGTTGATCATCATTACCATTCTCATTC AAGGCATCATAATAGACGACGTCCTAGTAGTAATTACAACTCAAGGAGGAGGAGAAGGAGATCAGCCGCCAGTAGATCAGCAGTAAATATTGTGAATGTG GATAAGTTTGGCGCCAGAGCTGATGGAAGATCAGATGATACTCAGGCATTTGGAAATGCTTGGAAGGCAGCTTGTTCTTCTACTGGCAAAACTCTGTTTG TTGTCCCTAAGAACAAGGTTTATACACTTAAACCAATCACCTTTTCAGGGCCTTGTCGATCTAATCTCGTAGTTAAGATATTCGGAACAATCAAAGCCTC TCGGAACATCAAGGACTACCAAAAGGACAGAAGACATTGGATCAGGTTCGAGGGCTTGCAAAATTTCAGAGTCAAGGGTGGTGGAACTATCAACGGCAAT GGCCAAGTTTGGTGGCAAAACTCGTGCAAAGTGAATAAACAACTTCCCTGCCAAAATGCACCAACTGGAGTGACATTCTACGACTGCAAGAACTTGATAG TATCGAACTTAAGGTTCCAAAATTCACAGAAAATGCATGTCTCCTTTGAGAAATGTGTGAACGTGAGAGTGTTGCATCTCATGGTTATCGCACCTGGGAA TAGTCCCAACACTGATGGCATTCATGTCACCGCCACTCAGAATATTCGCATTAGCCAATCCGTAATCAAAACAGGTGATGATTGCATCTCGATAGTAAGC GGGTCGAAAAACGTTCAAGTCAGTGATGTAACTTGCGGACCAGGTCACGGGATAAGCATTGGTAGCTTAGGAGCCGGGAATTCAGAAGCTCAAGTGTCAG ATGTGTTGGTCAACAGAGCAACACTTTCAGGAACCACCAATGGAGTCAGAATCAAGACTTGGCAGGGTGGATCTGGGTATGCCAGGAACATACAATTCCA AAACATTGTGATGAACAACGTGACCAATCCGATAATCATAGACCAAAACTATTGCGATCAAAACGAGCCGTGCCACCAACAGGGGTCGGCGGTGCGAGTG AGCGATGTGGTGTACAAGAACATAAAGGGGACGAGTTGGTCAAACGTAGCGATAAATTTGGAGTGCAGCAAGAAGTATCCTTGCAAGGGGATAGTGTTGC AAGATGTATCGTTACAGGCTACAAAACACAAGGAGGATGAGGAGGCTAAGGATGCTCCTTCTACAAGGGCTTCTTGTGTCAGCGTTGAATTCACTAGGAG AGGCACTGTTACTCCTCTATGCTCTTCCACCTGA
AA sequence Show only first row Show all	>Lus10029511 pacid=23149466 polypeptide=Lus10029511 locus=Lus10029511.g ID=Lus10029511.BGIv1.0 annot-version=v1.0 MYSSFILSFCLLLASLCCFLSCFASSSPQNNSKPLLFSHGNNHPLSTSANYRFHGMLSVDHHYHSHSRHHNRRRPSSNYNSRRRRRRSAASRSAVNIVNV DKFGARADGRSDDTQAFGNAWKAACSSTGKTLFVVPKNKVYTLKPITFSGPCRSNLVVKIFGTIKASRNIKDYQKDRRHWIRFEGLQNFRVKGGGTINGN GQVWWQNSCKVNKQLPCQNAPTGVTFYDCKNLIVSNLRFQNSQKMHVSFEKCVNVRVLHLMVIAPGNSPNTDGIHVTATQNIRISQSVIKTGDDCISIVS GSKNVQVSDVTCGPGHGISIGSLGAGNSEAQVSDVLVNRATLSGTTNGVRIKTWQGGSGYARNIQFQNIVMNNVTNPIIIDQNYCDQNEPCHQQGSAVRV SDVVYKNIKGTSWSNVAINLECSKKYPCKGIVLQDVSLQATKHKEDEEAKDAPSTRASCVSVEFTRRGTVTPLCSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10029511 [exp]	0	1
AT2G15780			Cupredoxin superfamily protein...		Lus10025269 [exp]	5.3	0.7547
					Lus10027418 [exp]	6.3	0.7343
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10038062 [exp]	22.6	0.6656
AT2G19940			oxidoreductases, acting on the...		Lus10034096 [exp]	22.7	0.6425
AT4G10265			Wound-responsive family protei...		Lus10004297 [exp]	28.4	0.6533
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10014655 [exp]	34.0	0.5968
AT5G25930			Protein kinase family protein ...		Lus10034976 [exp]	36.4	0.6235
AT4G08850			Leucine-rich repeat receptor-l...		Lus10031161 [exp]	40.4	0.6011
AT3G47570			Leucine-rich repeat protein ki...		Lus10030847 [exp]	48.6	0.5944
AT5G05340			Peroxidase superfamily protein...		Lus10032786 [exp]	56.1	0.5891

Compare expression of checked genes

Lus10029511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.