Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63520 210 / 4e-66 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT4G19170 105 / 5e-27 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT4G18350 104 / 1e-26 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT1G30100 103 / 3e-26 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT1G78390 103 / 4e-26 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT3G24220 100 / 2e-25 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT3G14440 97 / 8e-24 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029513 [exp] 310 / 7e-103 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10019710 [exp] 231 / 4e-74 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 230 / 6e-71 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10035700 [exp] 101 / 7e-27 AT4G19170 227 / 9e-71 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10035696 [exp] 103 / 3e-26 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10023673 [exp] 100 / 6e-25 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10011750 [exp] 100 / 8e-25 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10008443 [exp] 73 / 2e-15 AT4G19170 315 / 1e-102 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10042482 [exp] 59 / 1e-10 AT1G78390 374 / 4e-125 nine-cis-epoxycarotenoid dioxygenase 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G265400 [exp] 216 / 2e-68 AT3G63520 908 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265600 [exp] 213 / 4e-67 AT3G63520 878 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265900 [exp] 207 / 7e-65 AT3G63520 880 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.009G060500 [exp] 204 / 1e-63 AT3G63520 918 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.011G084100 [exp] 110 / 1e-28 AT1G30100 799 / 0.0 nine-cis-epoxycarotenoid dioxygenase 5 (.1) Potri.011G112400 [exp] 108 / 3e-28 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.005G069100 [exp] 107 / 1e-27 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.019G093400 [exp] 106 / 3e-27 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.001G393800 [exp] 98 / 2e-24 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.003G176300 [exp] 97 / 4e-24 AT3G24220 718 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Lus10029512 pacid=23149440 polypeptide=Lus10029512 locus=Lus10029512.g ID=Lus10029512.BGIv1.0 annot-version=v1.0 ATGGCGGACAAAATCCTGCTCCATGAGCAAGAGCCGGAGAAGAAGCAGGGCTACGCCGGCGGTCCAGCGATAGTCGCCGTCAACCCCAAGCCTCAACAAG GCATCGCCTCCACCCTTGTGGACTATCTAGAAAAGCTGATCGTGAAATTCGGCCACGATTCCACTCTGCCTCTCCACTATCTCTCTGGCAATTTTGCTCC TACTGACGAGTCTCCTCCGGCCAAAGACCTCCTCGTCAAAGGACATCTTCCTGAATGCTTGAATGGTGAGTTTGTGAGAGTAGGTCCTAACCCTAAGCTT TCCCCTGTGGCTGGATACCACTGGTTTGATGGAGATGGAATGATCCATGGAATGCGTATCAAAGATGGGAAGGCAACATACGTCAGCCGCTATGTTAAGA CATCTCGCCTTCAGCAAGAACAATTTTATGGACGTCCCAAATTCATGAAGGTATTTGATTGCATGAGAGGAAGAATTTAG
AA sequence Show only first row Show all	>Lus10029512 pacid=23149440 polypeptide=Lus10029512 locus=Lus10029512.g ID=Lus10029512.BGIv1.0 annot-version=v1.0 MADKILLHEQEPEKKQGYAGGPAIVAVNPKPQQGIASTLVDYLEKLIVKFGHDSTLPLHYLSGNFAPTDESPPAKDLLVKGHLPECLNGEFVRVGPNPKL SPVAGYHWFDGDGMIHGMRIKDGKATYVSRYVKTSRLQQEQFYGRPKFMKVFDCMRGRI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10029512 [exp]	0	1
AT3G55140			Pectin lyase-like superfamily ...		Lus10024439 [exp]	1.0	0.9499
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Lus10026996 [exp]	2.0	0.9359
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10011001 [exp]	3.0	0.9072
AT5G05200			Protein kinase superfamily pro...		Lus10012865 [exp]	6.5	0.8914
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Lus10020196 [exp]	8.8	0.8720
AT1G16720		HCF173	high chlorophyll fluorescence ...		Lus10034781 [exp]	10.0	0.8823
AT2G35700	AP2_ERF	ATERF38	ERF family protein 38 (.1)		Lus10004738 [exp]	10.2	0.8079
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017653 [exp]	11.0	0.8717
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10000593 [exp]	12.3	0.9037
AT3G11420			Protein of unknown function (D...		Lus10002713 [exp]	13.6	0.8946

Compare expression of checked genes

Lus10029512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.