Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63520 901 / 0 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT3G24220 352 / 4e-112 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT1G78390 350 / 1e-110 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT4G19170 347 / 3e-110 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT3G14440 341 / 7e-108 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT1G30100 340 / 2e-107 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT4G18350 312 / 4e-97 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT4G32810 97 / 8e-21 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) AT1G49920 50 / 5e-06 MuDR family transposase (.1) AT1G64255 49 / 1e-05 MuDR family transposase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019710 [exp] 912 / 0 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 910 / 0 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10035696 [exp] 348 / 2e-110 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10023673 [exp] 340 / 1e-107 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10029512 [exp] 313 / 4e-103 AT3G63520 211 / 9e-67 carotenoid cleavage dioxygenase 1 (.1) Lus10011750 [exp] 308 / 2e-95 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10026185 [exp] 269 / 3e-81 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Lus10008443 [exp] 216 / 2e-63 AT4G19170 315 / 1e-102 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10009513 [exp] 212 / 7e-60 AT3G63520 219 / 4e-64 carotenoid cleavage dioxygenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G265400 [exp] 944 / 0 AT3G63520 908 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.009G060500 [exp] 935 / 0 AT3G63520 918 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265900 [exp] 919 / 0 AT3G63520 880 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265600 [exp] 914 / 0 AT3G63520 878 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.011G112400 [exp] 363 / 1e-116 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.019G093400 [exp] 355 / 3e-113 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.005G069100 [exp] 354 / 1e-112 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.001G393800 [exp] 350 / 2e-111 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.003G176300 [exp] 348 / 1e-110 AT3G24220 718 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Potri.009G151900 [exp] 338 / 7e-107 AT4G19170 548 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein PF04434 [flax] [poplar] SWIM SWIM zinc finger
Representative CDS sequence Show only first row Show all	>Lus10029513 pacid=23149455 polypeptide=Lus10029513 locus=Lus10029513.g ID=Lus10029513.BGIv1.0 annot-version=v1.0 ATGGCGGACAAAATCCTGCTCCATGAGCAAGAGCCGGAGAAGAAGCAGGGCTACGCCGGCGGTCCAGCGATAGTCGCCGTCAACCCCAAGCCTCAACAAG GCATCGCCTCCACCCTTGTGGACTATCTAGAAAAGCTGATCGTGAAATTCGGCCACGATTCCACTCTGCCTCTCCACTATCTCTCTGGCAATTTTGCTCC TACTGACGAGTCTCCTCCGGCCAAAGACCTCCTCGTCAAAGGACATCTTCCTGAATTCTTGAATGGTGAGTTTGTGAGAGTAGGTCCTAACCCTAAGCTT TCCCCTGTGGCTGGATACCACTGGTTTGATGGAGATGGAATGATCCATGGAATGCGTATCAAAGATGGGAAGGCAACATACGTCAGCCGCTATGTTAAGA CATCTCGCCTTCAGCAAGAACAATTTTATGGACGTCCCAAATTCATGAAGATTGGGGATCTTAAGGGATTTTTTGGGTTGTTCATGGTTAACATGCAGAC CTTAAGAGCGAAACTGAAAATATTGGATTTTTCATATGGAAATGGGACAGCTAATACGGCTCTTATTTATCATCACGGGAAGCTCCTAGCACTTTCAGAG GCTGATAAGCCCTATGTGGTTAAAATCATGGAAGATGGGGATCTGCAGACCATTGGTTTGCTGGACTATGACAAGAGGCTCAAACATTCTTTCACTGCTC ACCCAAAGGTTGATCCATTCACAGGAGAAATGTTTACTTTCGGATATTCGCATGAGCAACCATATGTAACATATAGGGTCATCTCAAAGGATGGCTTCAT GCATGATCCTGTGCCAATAACAATACCAGAGTCCGTCATGATGCATGACTTTGCGATTACTGAGAACTACGCAATCTTTATGGATCTTCCTTTATACTTC AAACCTAAGGAAATGGTGAAGGAAAAGAAGTTCATTTTTTCTTTTGATGCAACCAAAAAGGCTCGTTTTGGTGTCCTGCCTCGATATGCAAAAGATGACC TTTTGATCAAATGGTTTGAGCTTCCGAATTGCTTCATTTTTCACAATGCCAACGCTTGGGAGGAGGGGGATGAAGTTGTCTTGATTACTTGCCGCCTTGA AAATCCAGACTTGGATATGGTCAATGGAGCTGTAAAGGAAAAACTTGAGAACTTTGCAAATGAACTATACGAAATGAGGTTCAACATGACGACTGGAGTG GCTTCACAGAAGAAACTGTCAGCATCTGCGGTTGACTTCCCCAGAATCAATGAGAGTTACACGGGCAGGAAACAACGATACGTGTATGGAACCAGTCTAG ATAGCATAGCAAAGGTGACAGGAATCATCAAAGTTGATCTCCATGATGAACCCCAGGCAGCAGATAAAACTGAGCTGGAAGTTGGAGGGAATATTAAAGG AATCTTCAACCTAGGACCCGGTAGATTTGGTTCAGAAGCGATATTTGTTCCTCGGGAGCCTGGACTCACGTCCGAGGAAGATGATGGCTACCTGATATTC TTTTCCCATGATGAAAATACTGGAAAATCAGCTGTAATTGTAATAGATGCGAAAACGATGTCAGCGGATCCAGTGGCAGTGGTAGAATTACCCCATAGAG TTCCATATGGATTCCATGCCTTCTTTGTCACAGAGGAACAACTTCAAGAACAAGCAAAACTGCTGACTAAATTTTTTTATGAACGGCGCAAGAAATACAA GGTAGCCATTCGTGCTAATGAATATTGGACTAAGAGGTGTCGAACAACCATGCGTGAGCACGGTGTCAACGGGCAGACTAACACGGTGCGGTTTTTCGAT CACACAGCTAGAGAGTATGATGTTGTTAGTGCATACAACAACAGAAATAGATATGGAAACCACACATATAGGGTCTACCTAGATCACATGAACCGCAATA TGTTACATTCATGTTCTTGTGGCATCTTCCAGCACTCGACGATTTCGTGTAAACATGCTTATGCATTGTGCAATGCGGTCAACCTCAACCCGTACCACTT CGTGCATCCCATGTTCAAGCTGTCCACAATAGCCCAGACATATGCTGTTAGTTTCCACCCTATTGATGGGCCGGAGGACTGGGCTCAATATGGTGGACTT GAGATCATCTCGAACCGCAATCTTCTCCACGTCTACGAGAGGCCAAGGCACACTATAATCCACAATGAAATGGATTCGACTGAAGACATAGAGCTGCATT GTACTGCTTGCAACCAAGGTAGGCATAGGTGA
AA sequence Show only first row Show all	>Lus10029513 pacid=23149455 polypeptide=Lus10029513 locus=Lus10029513.g ID=Lus10029513.BGIv1.0 annot-version=v1.0 MADKILLHEQEPEKKQGYAGGPAIVAVNPKPQQGIASTLVDYLEKLIVKFGHDSTLPLHYLSGNFAPTDESPPAKDLLVKGHLPEFLNGEFVRVGPNPKL SPVAGYHWFDGDGMIHGMRIKDGKATYVSRYVKTSRLQQEQFYGRPKFMKIGDLKGFFGLFMVNMQTLRAKLKILDFSYGNGTANTALIYHHGKLLALSE ADKPYVVKIMEDGDLQTIGLLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSHEQPYVTYRVISKDGFMHDPVPITIPESVMMHDFAITENYAIFMDLPLYF KPKEMVKEKKFIFSFDATKKARFGVLPRYAKDDLLIKWFELPNCFIFHNANAWEEGDEVVLITCRLENPDLDMVNGAVKEKLENFANELYEMRFNMTTGV ASQKKLSASAVDFPRINESYTGRKQRYVYGTSLDSIAKVTGIIKVDLHDEPQAADKTELEVGGNIKGIFNLGPGRFGSEAIFVPREPGLTSEEDDGYLIF FSHDENTGKSAVIVIDAKTMSADPVAVVELPHRVPYGFHAFFVTEEQLQEQAKLLTKFFYERRKKYKVAIRANEYWTKRCRTTMREHGVNGQTNTVRFFD HTAREYDVVSAYNNRNRYGNHTYRVYLDHMNRNMLHSCSCGIFQHSTISCKHAYALCNAVNLNPYHFVHPMFKLSTIAQTYAVSFHPIDGPEDWAQYGGL EIISNRNLLHVYERPRHTIIHNEMDSTEDIELHCTACNQGRHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10029513 [exp]	0	1
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Lus10025579 [exp]	1.7	0.9418
AT5G03560			Tetratricopeptide repeat (TPR)...		Lus10012049 [exp]	2.4	0.9208
AT3G11420			Protein of unknown function (D...		Lus10002713 [exp]	2.8	0.9341
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10000593 [exp]	6.0	0.9281
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Lus10026795 [exp]	6.3	0.9249
AT5G11840			Protein of unknown function (D...		Lus10027492 [exp]	6.5	0.9188
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10042431 [exp]	8.5	0.9171
AT5G57345			unknown protein		Lus10001632 [exp]	10.0	0.9247
AT3G55140			Pectin lyase-like superfamily ...		Lus10024439 [exp]	11.7	0.9011
AT3G55760			unknown protein		Lus10021897 [exp]	13.0	0.8978

Compare expression of checked genes

Lus10029513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.