Plant FIBer expression Database

Lus10029514 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G15030 162 / 4e-50 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039604
[exp]
173 / 2e-53 AT3G21640 327 / 3e-110 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G266200
[exp]
157 / 2e-48 AT4G15030 310 / 4e-107 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09725 Fra10Ac1 Folate-sensitive fragile site protein Fra10Ac1
Representative CDS sequence
>Lus10029514 pacid=23149451 polypeptide=Lus10029514 locus=Lus10029514.g ID=Lus10029514.BGIv1.0 annot-version=v1.0
ATGACCTCGTTTGCCCCTCTGAAAACTGCAATCTATGACCGGGAAGCTCGCAAACAGCAATACCAAGCTCACGTCCGAGGCCTCAACGCCTACGATCGGC
ACAATAAGTTTGTCAACGATTACGTTAAATTCTATGGCAATGAAAAATCTAGCAAGGTCAAATTGCCAGTTAAGACAGACCAGGACACTCTAAGAGAAGG
TTACCGATACTGCATAGCGGACATGTCATTTTACAAGACTGGCAAGGTGAACTTCTCTTATTCTGAAGCTGGAGAAAATAAGCAGGCACTTGTGAAATTG
GTGGCATGTGAAAGGTGCGCAGAGAAACTTCATTACAGAAACAGAAAAGAGAAGGAGAAATTGGAAAAGATGGAGAAAGAAGAGCAAAAAAGAAAGAGGT
ACACTGTACGTCTTGTCTGTTCCTATTTTAAGGCCGTAGATTATAATCGCTTCTACCTCCCTCCTTTACAATGGGTGGACAACTGA
AA sequence
>Lus10029514 pacid=23149451 polypeptide=Lus10029514 locus=Lus10029514.g ID=Lus10029514.BGIv1.0 annot-version=v1.0
MTSFAPLKTAIYDREARKQQYQAHVRGLNAYDRHNKFVNDYVKFYGNEKSSKVKLPVKTDQDTLREGYRYCIADMSFYKTGKVNFSYSEAGENKQALVKL
VACERCAEKLHYRNRKEKEKLEKMEKEEQKRKRYTVRLVCSYFKAVDYNRFYLPPLQWVDN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G15030 unknown protein Lus10029514
[exp]
0 1
AT4G10050 esterase/lipase/thioesterase f... Lus10041054
[exp]
2.4 0.9038
AT5G09860 AtTHO1, AtHPR1 nuclear matrix protein-related... Lus10024130
[exp]
3.2 0.8719
AT4G17380 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, M... Lus10007489
[exp]
4.2 0.8714
AT3G62080 SNF7 family protein (.1.2) Lus10038021
[exp]
8.8 0.8399
AT1G19340 Methyltransferase MT-A70 famil... Lus10032722
[exp]
9.8 0.8605
AT5G50840 unknown protein Lus10040383
[exp]
12.6 0.8523
AT1G73020 unknown protein Lus10009732
[exp]
19.1 0.8481
AT4G32730 MYB ATMYB3R-1, PC-M... C-MYB-LIKE TRANSCRIPTION FACTO... Lus10038623
[exp]
19.5 0.8256
AT1G06110 SKIP16 SKP1/ASK-interacting protein 1... Lus10004805
[exp]
21.2 0.8422
AT4G09140 ATMLH1 ARABIDOPSIS THALIANA MUTL-HOMO... Lus10033274
[exp]
21.8 0.8335

Lus10029514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.