Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07985 49 / 1e-07 Expressed protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039608 [exp] 111 / 2e-31 ND 37 / 0.001
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G266500 [exp] 63 / 6e-13 AT1G07985 73 / 3e-17 Expressed protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029516 pacid=23149461 polypeptide=Lus10029516 locus=Lus10029516.g ID=Lus10029516.BGIv1.0 annot-version=v1.0 ATGGCTGTGACTGAAGAACCAATATTGTCCCGCTTGGATCGCCTAGACCACATGATGAGGCAGCTGGAGGAGATAAGGGGGAGCAGGAGGTGGTCATCTA AGAGCTCCCCGAGGTCTTACCCGTCAACTCCCACGAGTGCGACTACAGGAGGGAGCCATGCGACCTCGTTTACTACGGATAATACACCATCCTCACCAAA GAGTATGGAGAAACGGTGTCGTCCACTGGAGAGCGTCATGGCGGAAGTTGGGATGAAAGGAAACCTCATCGACCGTCTTCACTTGGTCGAGGACCGCATG CTTAAGCTGTGCATGCAGATGGAGGAAGAGCTGGAGGAGGAGAGGAAGAAAGATGGTAACGAGGAGAGTAGTGGCAATAGCCCGAGGTCATCAGAGAAGA AAAAAGGGCTGAAAGGACTGGTCCGCAAGATAATTCATCCACACCATCACAACCACCACCACCATAACGATCACCACCACCACCATGGTAATAATAGTCC AAGTCATCGAGACAGCTTCTCATGA
AA sequence Show only first row Show all	>Lus10029516 pacid=23149461 polypeptide=Lus10029516 locus=Lus10029516.g ID=Lus10029516.BGIv1.0 annot-version=v1.0 MAVTEEPILSRLDRLDHMMRQLEEIRGSRRWSSKSSPRSYPSTPTSATTGGSHATSFTTDNTPSSPKSMEKRCRPLESVMAEVGMKGNLIDRLHLVEDRM LKLCMQMEEELEEERKKDGNEESSGNSPRSSEKKKGLKGLVRKIIHPHHHNHHHHNDHHHHHGNNSPSHRDSFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07985			Expressed protein (.1)		Lus10029516 [exp]	0	1
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10023221 [exp]	3.5	1.0000
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Lus10006093 [exp]	4.9	1.0000
					Lus10003843 [exp]	4.9	1.0000
					Lus10001326 [exp]	5.1	1.0000
					Lus10004351 [exp]	6.0	1.0000
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10025919 [exp]	6.9	1.0000
AT3G11180			2-oxoglutarate (2OG) and Fe(II...		Lus10023602 [exp]	7.5	1.0000
					Lus10033811 [exp]	10.2	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	10.5	1.0000
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013823 [exp]	11.0	1.0000

Compare expression of checked genes

Lus10029516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.