Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08040 567 / 0 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT1G51340 509 / 1e-175 MATE efflux family protein (.1.2) AT4G38380 318 / 8e-101 MATE efflux family protein (.1) AT2G38330 315 / 3e-100 MATE efflux family protein (.1) AT2G21340 65 / 8e-11 MATE efflux family protein (.1.2) AT4G39030 47 / 4e-05 SCORD3, SID1, EDS5 SALICYLIC ACID INDUCTION DEFICIENT 1, susceptible to coronatine-deficient Pst DC3000 3, ENHANCED DISEASE SUSCEPTIBILITY 5, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039609 [exp] 935 / 0 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10016412 [exp] 689 / 0 AT1G51340 569 / 0.0 MATE efflux family protein (.1.2) Lus10026303 [exp] 509 / 7e-176 AT1G51340 564 / 0.0 MATE efflux family protein (.1.2) Lus10042365 [exp] 509 / 9e-176 AT1G51340 571 / 0.0 MATE efflux family protein (.1.2) Lus10027367 [exp] 502 / 1e-170 AT1G51340 664 / 0.0 MATE efflux family protein (.1.2) Lus10012227 [exp] 327 / 4e-104 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10023943 [exp] 300 / 2e-93 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10026829 [exp] 290 / 8e-90 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10002856 [exp] 267 / 3e-82 AT2G38330 477 / 2e-165 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G061100 [exp] 669 / 0 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.001G266900 [exp] 665 / 0 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.016G053600 [exp] 553 / 0 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.009G053700 [exp] 553 / 0 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.016G126000 [exp] 327 / 3e-104 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.004G183600 [exp] 320 / 5e-101 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.009G143400 [exp] 318 / 1e-100 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.005G102800 [exp] 298 / 6e-93 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.009G122900 [exp] 64 / 3e-10 AT2G21340 684 / 0.0 MATE efflux family protein (.1.2) Potri.009G122600 [exp] 57 / 2e-08 AT2G21340 646 / 0.0 MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10029517 pacid=23149426 polypeptide=Lus10029517 locus=Lus10029517.g ID=Lus10029517.BGIv1.0 annot-version=v1.0 ATGGCTGAAGAAGGTTCTTTACAGCATGCTGCTCATCCTGTTGCTGAGAAGAAATGCAACTTCCCAATCTTGATCTTCTTTAGAGATGCAAGGCTTGTTT TCAAGATGGATTCACTTGGTAGGGAGATACTAAGGATCGCAGTCCCAGCTGCAATGGCCTTAGCAGCCGACCCTGTTGCTTCCTTGATTGACACTGCTTT CATTGGCCACTTAGGACCTGTGGAGATAGCTGCTGTTGGAGTTTCGATCGCCATATTCAACCAAGCATCAAAGGTCACCATATTCCCATTGGTGAGCATC ACAACCTCTTTTGTTGCTGAGGAGGAAACTGTGCAGAGAATCAGCAATAATGAACCACTGAAAGCAGAGGAAATGGCAGAGTCAAAAGCAGAGGAAGATC ATGTTCACCATCAAGATTTGGAGGGAGGTTTGAGCTCAACACTGCAACAGGATTCGCAGGAGAAAGATGATAAGATGGAGCTTCCTTCAGCACCTGCAAC TGATGGAAATGATAGTAACAAGAAGGTGAAGAGGCATATCCCTTCAGCATCCACAGCATTGGTTGTTGGTGGAATCCTTGGTATCATTCAGGCTGTTGTA CTTTTCTTCGCTGCAAACCCTCTTTTGCAAGTTATGGGGGTCAAACCTGGTTCATCAATGCTCATCCCAGCACACAAGTACTTGACTTTGAGGTCACTTG GATCACCAGCAGTTCTTCTTTCACTGGCGATGCAAGGAGTTTTCCGAGGTTTGAAGGACACTAAAACTCCACTGTATGCCACTGTTGCTGGAGATGTAGC AAATATCATTCTGGACCCAATTTTCATCTTTCTTTGCAAACTGGGAGTTAGTGGTGCAGCTATCGCTCATGTTATTTCTCAGTACTTGATTACAGTGATC CTCCTGGTGAAACTCATGAAAATGATTGATCTGATGCCTCCAAGCATGAAAGACTTGCAATTTAGCCGGTTCCTTAAGAACGGTTTTCTGTTACTAGCTA AAGTGATAGCAGCAACAATCTGTGTTACCTTTGCTGCATCGAGAGCTACGCGGCTGGGATCAACTCCTATGGCTGCTTTCCAAATTTGCTTACAAGTCTG GTTGACATCTTCACTTCTTGCTGATGGATTGGCTGTTGCTGGACAGGCCATAATTGCTACTGCATTTGCTGAGAAGGACTATCACAAGGCAACCAGTGCT GCAACTAGAGTCCTGCAAATGAGTTTCGTTCTTGGGTTGGGGCTAGCAGGAGTAGTTGGAGCTGGTTTATACTTTGGAGACACAATTTTCTCTAAAGATC CAAATGTTCTTCACATCATAAGCATAGGCATCCCGTTTGTTGCAGCTACACAACCTATAAACTCAATAGCCTTTGTGTTCGATGGAGTGAATTTCGGGGC ATCAGATTTCAAGTTCTCATCCTATTCCATGGTTTTGGTAGCCATGGTAACCCTTCCAGCAGTATACCTTCTGTCGAACTCAGGCGGATTTATCGGGATT TGGGTGGCTCTAAGTATCTTCATGGGACTAAGAACATTTGCTGGAATTTGGAGCTTGTTCAAAGTCTGGATTGGTGCTTTAGTTCCATCTCTTGAATGTC AATTCAGCATGGACGAAAGACAGTGCCGTGGGATGAGGAGATATTGCATTGTTAAAGACTGGAACGGGAAGGTGATTTTTGCAGCTACCAAAACCGAAGG TGTGAAGTGGCCAGCGACTATCGCTGAAGGAAGAGCAGTCTTGTTTGGACTTGAGAAAGCTATCAATAAAAGATTCGCACCGCTGATTGTGGAGTCGGAT TGCAAGAACCTCATTGGCCAACTGTCAAAAGGGATGAATGCAATGGGTAACATTTGTGCTGACATTCATGGGTTGGAAGTGCAAGGTGATCTTCGAGGAT GGTCGTACATATAG
AA sequence Show only first row Show all	>Lus10029517 pacid=23149426 polypeptide=Lus10029517 locus=Lus10029517.g ID=Lus10029517.BGIv1.0 annot-version=v1.0 MAEEGSLQHAAHPVAEKKCNFPILIFFRDARLVFKMDSLGREILRIAVPAAMALAADPVASLIDTAFIGHLGPVEIAAVGVSIAIFNQASKVTIFPLVSI TTSFVAEEETVQRISNNEPLKAEEMAESKAEEDHVHHQDLEGGLSSTLQQDSQEKDDKMELPSAPATDGNDSNKKVKRHIPSASTALVVGGILGIIQAVV LFFAANPLLQVMGVKPGSSMLIPAHKYLTLRSLGSPAVLLSLAMQGVFRGLKDTKTPLYATVAGDVANIILDPIFIFLCKLGVSGAAIAHVISQYLITVI LLVKLMKMIDLMPPSMKDLQFSRFLKNGFLLLAKVIAATICVTFAASRATRLGSTPMAAFQICLQVWLTSSLLADGLAVAGQAIIATAFAEKDYHKATSA ATRVLQMSFVLGLGLAGVVGAGLYFGDTIFSKDPNVLHIISIGIPFVAATQPINSIAFVFDGVNFGASDFKFSSYSMVLVAMVTLPAVYLLSNSGGFIGI WVALSIFMGLRTFAGIWSLFKVWIGALVPSLECQFSMDERQCRGMRRYCIVKDWNGKVIFAATKTEGVKWPATIAEGRAVLFGLEKAINKRFAPLIVESD CKNLIGQLSKGMNAMGNICADIHGLEVQGDLRGWSYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10029517 [exp]	0	1
AT3G63380			ATPase E1-E2 type family prote...		Lus10004086 [exp]	2.4	0.7552
AT1G53510		ATMPK18	ARABIDOPSIS THALIANA MAP KINAS...		Lus10005568 [exp]	10.0	0.6937
AT5G24320			Transducin/WD40 repeat-like su...		Lus10023033 [exp]	10.7	0.6901
AT4G05460			RNI-like superfamily protein (...		Lus10026115 [exp]	11.0	0.6211
AT3G63380			ATPase E1-E2 type family prote...		Lus10004087 [exp]	11.0	0.7166
AT1G21400			Thiamin diphosphate-binding fo...		Lus10000772 [exp]	14.8	0.6973
AT2G31800			Integrin-linked protein kinase...		Lus10008350 [exp]	24.5	0.6500
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10038894 [exp]	36.9	0.6527
AT1G19715			Mannose-binding lectin superfa...		Lus10024291 [exp]	42.0	0.6586
AT3G59910			Ankyrin repeat family protein ...		Lus10005306 [exp]	54.4	0.6056

Compare expression of checked genes

Lus10029517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.