Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08490 219 / 1e-69 unknown protein AT3G24600 79 / 9e-16 Late embryogenesis abundant protein, group 2 (.1) AT5G42860 63 / 5e-11 unknown protein AT1G45688 60 / 9e-10 unknown protein AT4G35170 53 / 1e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G41990 52 / 3e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025793 [exp] 86 / 2e-18 AT1G45688 221 / 5e-70 unknown protein Lus10035869 [exp] 85 / 3e-18 AT1G45688 219 / 3e-69 unknown protein Lus10029743 [exp] 82 / 3e-17 AT1G45688 301 / 4e-101 unknown protein Lus10010232 [exp] 74 / 1e-14 AT1G45688 416 / 3e-146 unknown protein Lus10009749 [exp] 72 / 8e-14 AT5G42860 256 / 2e-84 unknown protein Lus10023652 [exp] 71 / 3e-13 AT1G45688 183 / 2e-55 unknown protein Lus10034926 [exp] 69 / 1e-12 AT1G45688 182 / 5e-55 unknown protein Lus10022644 [exp] 58 / 4e-09 AT4G35170 279 / 4e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G061300 [exp] 338 / 3e-115 AT3G08490 209 / 7e-66 unknown protein Potri.001G267200 [exp] 329 / 2e-111 AT3G08490 196 / 6e-61 unknown protein Potri.003G052900 [exp] 90 / 3e-20 AT1G45688 176 / 6e-53 unknown protein Potri.001G183600 [exp] 88 / 1e-19 AT1G45688 185 / 4e-56 unknown protein Potri.006G160100 [exp] 83 / 9e-18 AT3G24600 184 / 3e-54 Late embryogenesis abundant protein, group 2 (.1) Potri.007G045000 [exp] 78 / 7e-16 AT1G45688 273 / 4e-90 unknown protein Potri.014G026800 [exp] 69 / 1e-12 AT1G45688 301 / 2e-101 unknown protein Potri.002G124600 [exp] 67 / 4e-12 AT1G45688 284 / 1e-94 unknown protein Potri.009G140600 [exp] 56 / 1e-08 AT2G41990 232 / 5e-75 unknown protein Potri.004G180900 [exp] 55 / 3e-08 AT2G41990 256 / 1e-84 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029519 pacid=23149417 polypeptide=Lus10029519 locus=Lus10029519.g ID=Lus10029519.BGIv1.0 annot-version=v1.0 ATGGCAGTTCCCAATAATAGTCACATTGATGAAGATGATGATCAGAAACAAGCAGAAACGGTGGCGTTTCATGATCACCACAACTCAATCTCCAGCAGCA GCTGCGGCGCCGCCTACTCTATGATGCAATGTCCCTTCTACGTTCAGAGCCCAATATCCACTGCCACCGCCGCCAATAATGCCGAACACTCTACCTTCCT TGTCTCTCCGACAAGGTCAGACGACACAACCCCACTCACAAAGGACGACTCTGTGGCGGCCGCCGGGGGATTCCAATACTGTTGCTCATACGGTTCGTCA ACCAACGTTTCGTTCCTTGACCAGAAGAAGGTAGTTGTGAATGGGAATGCTATTAGGGATATAAATGGGGTGGTGATTGTGGACGGACTCCGCCACGTTG GCTTAGGGGAAGAGGACCACCGGGGAGAGGAGGAGGAGGAAGAAGACCACGCGGAGGAGGAGGATGACGAGAATTATTATGGGAATGGCGGATGGTGGCG GAGATATTTTTCATTGACGAAGAGGTCGTCATGTGGATGGATATGGATTCAGTTGAGTTGGAGGTTTATGGTTAGTTTGGGAGTGGCTTTACTTGTTTTC TACCTTACTACTAACCCTCCTCCTCCCAAGCTCTCCATCAAGGTAGCAGGAGTAAATGAATTTGGACTAGGAGAAGGAGTGGACCCAACTGGTATCACAA CCAAGATCCTCACCTTCAACTGCTCACTCCATCTCCTCGTAGACAACAACTCCAAACTATTTGGGCTTCACATTCACCCTCCTCTCCTTCAATTGTCCTT CGGCCGTCTCCCTTTCGCCATCTCCCACGGCTCCAAAATGTACGCCGACAGCCACCATTCGACGCTGTTCGAGCTGTATGTTGGCACGAGGAACAAACCA ATGTATGGAGCCGGAAGGAGCATGCAAGATTTTATGGAATCGGGGAGAGGGTTGCCTATACAAGTGAGAGTGAGCTTGAGCTCCAATTTTAGGGTTGTTT GGAACCTTATACGTCCCAAGTTCCATCATAAGGTTGAATGCATGTTACTTCTTGACAAAACTTATGATAGCAAACATCGGACTCAAACTTATCGTAGTAC TTGTGCAATCATGTGA
AA sequence Show only first row Show all	>Lus10029519 pacid=23149417 polypeptide=Lus10029519 locus=Lus10029519.g ID=Lus10029519.BGIv1.0 annot-version=v1.0 MAVPNNSHIDEDDDQKQAETVAFHDHHNSISSSSCGAAYSMMQCPFYVQSPISTATAANNAEHSTFLVSPTRSDDTTPLTKDDSVAAAGGFQYCCSYGSS TNVSFLDQKKVVVNGNAIRDINGVVIVDGLRHVGLGEEDHRGEEEEEEDHAEEEDDENYYGNGGWWRRYFSLTKRSSCGWIWIQLSWRFMVSLGVALLVF YLTTNPPPPKLSIKVAGVNEFGLGEGVDPTGITTKILTFNCSLHLLVDNNSKLFGLHIHPPLLQLSFGRLPFAISHGSKMYADSHHSTLFELYVGTRNKP MYGAGRSMQDFMESGRGLPIQVRVSLSSNFRVVWNLIRPKFHHKVECMLLLDKTYDSKHRTQTYRSTCAIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08490			unknown protein		Lus10029519 [exp]	0	1
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10039610 [exp]	6.0	0.9425
AT5G22400			Rho GTPase activating protein ...		Lus10004864 [exp]	8.4	0.8980
AT2G28315			Nucleotide/sugar transporter f...		Lus10037397 [exp]	10.6	0.9423
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Lus10005861 [exp]	11.5	0.9312
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10010268 [exp]	13.1	0.9342
AT1G79620			Leucine-rich repeat protein ki...		Lus10021003 [exp]	13.7	0.9403
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10005155 [exp]	15.3	0.9079
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10004831 [exp]	17.9	0.8996
AT1G79620			Leucine-rich repeat protein ki...		Lus10023848 [exp]	18.3	0.9379
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Lus10014464 [exp]	20.6	0.8939

Compare expression of checked genes

Lus10029519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.