Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52110 223 / 7e-70 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039611 [exp] 628 / 0 AT3G52110 233 / 8e-74 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G061900 [exp] 314 / 3e-105 AT3G52110 267 / 1e-87 unknown protein Potri.001G267600 [exp] 303 / 1e-100 AT3G52110 264 / 4e-86 unknown protein Potri.006G054900 [exp] 128 / 1e-34 AT3G52110 115 / 3e-30 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029522 pacid=23149392 polypeptide=Lus10029522 locus=Lus10029522.g ID=Lus10029522.BGIv1.0 annot-version=v1.0 ATGGAACCCGCGAAGATAGACTGGAAGAGAATCGAATCGGTTTATGAAGAAGACAGGCTCTACGAGACTATCAAAGCTCCCAAATGGGTCGATTTCTTGG CCCCTGAAGATGATTCTGATTACTCCGCCGATGTCGCTTGGTTCTGCAGACCAGATTGTAACCATCCTAAGACCGCTGAAGATTTCTTGAAGTTCACTCG TGCCTCATCCCAGCATTCAAGATCTGCCACTAAAACTCGGAGCCCATTTGGCGACTTGAATCAAAGGAATGCAAGATTGAAGAGGAGAGGGCAAACTCAG TCTTCAATCCCATCCTTCGATGAAAGGGATTCAAGTCAAGACAGTGAAAACCAGAACCCTAATTCTTCAACAATCCCACCAAATTTCCAGACCAAGTCCG TGAAATCGTTGTTCAAATCAAGCTCTGAAAGGAAGAGACCAGTGGCTGAGGAGGATGCATCAGAAGGCAATGTGGTGCGTACACTGAAACCCACATTGTC AGCAAGGAATTTGTTCGGTGGGAAGGATATACTGGGCCATATTTCCGAGTTCTGCAATGAATTAAAGAAGTTGACGATGAGATCAAAGGGGAGAGATAAT GATGAGAGCTTCAAGTCCGAAGAAAACGAAGTGGTGGAAGATAAATGTGTGGTTGTGAAGAAAGAAGAGGATCACAGAGAGGTACTGGGCAATTTGGATT TGAAAGAGAAACAGAAGACGCCACCGCCTCAAGTGGTAAAATTAGACGAGAGTGGGGGAGGGAGTGGAAAGGAGAAGCCCCGGAGAATAAAAAGGTTGGA TGATGCAGAGAACATCCCAGTCTGCCTTAACCTTGATTTGGAAAACGTGAAACCACAGCTCAAAGATGAAGAGCGGTTGCTGCAAATTCGGACGAATCCT CCTTCTCCCCAATGCTTCTCTGCGGGTCGTGCATCTGCCAAGACCACCACCCCGTCCAAAACTCGAAAGTCCAGAATGAATGAGAGATCAATTCTTCAGG AAGTGAAGCAGCAGAACAAGGAAGTGATCAAAGACGAAAACCATGAGAAGAGTGTGGGAGAAAGTTTCGCCATTGTCGAAGGTAAAGAATCAAAAGCAGC TCTGGATATGTTCTGGTTCCTGAAGCCCTGCACACTCTCCAGCTAA
AA sequence Show only first row Show all	>Lus10029522 pacid=23149392 polypeptide=Lus10029522 locus=Lus10029522.g ID=Lus10029522.BGIv1.0 annot-version=v1.0 MEPAKIDWKRIESVYEEDRLYETIKAPKWVDFLAPEDDSDYSADVAWFCRPDCNHPKTAEDFLKFTRASSQHSRSATKTRSPFGDLNQRNARLKRRGQTQ SSIPSFDERDSSQDSENQNPNSSTIPPNFQTKSVKSLFKSSSERKRPVAEEDASEGNVVRTLKPTLSARNLFGGKDILGHISEFCNELKKLTMRSKGRDN DESFKSEENEVVEDKCVVVKKEEDHREVLGNLDLKEKQKTPPPQVVKLDESGGGSGKEKPRRIKRLDDAENIPVCLNLDLENVKPQLKDEERLLQIRTNP PSPQCFSAGRASAKTTTPSKTRKSRMNERSILQEVKQQNKEVIKDENHEKSVGESFAIVEGKESKAALDMFWFLKPCTLSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52110			unknown protein		Lus10029522 [exp]	0	1
AT5G25590			Protein of unknown function (D...		Lus10037902 [exp]	3.6	0.9351
AT1G48620		HON5	high mobility group A5 (.1)		Lus10028911 [exp]	6.3	0.8971
AT3G10310			P-loop nucleoside triphosphate...		Lus10035442 [exp]	6.8	0.9272
AT2G29210			splicing factor PWI domain-con...		Lus10001561 [exp]	6.9	0.9024
AT3G22520			unknown protein		Lus10041202 [exp]	7.7	0.9046
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	8.3	0.9148
AT3G53940			Mitochondrial substrate carrie...		Lus10021497 [exp]	10.0	0.8836
AT1G34110			Leucine-rich receptor-like pro...		Lus10017782 [exp]	13.0	0.8864
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10026612 [exp]	13.6	0.8854
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	13.7	0.8967

Compare expression of checked genes

Lus10029522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.