Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57670 292 / 1e-97 C2H2ZnF WIP2, NTT WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) AT3G20880 287 / 3e-95 C2H2ZnF WIP4 WIP domain protein 4 (.1) AT1G51220 283 / 7e-95 C2H2ZnF AtWIP5, WIP5 WIP domain protein 5 (.1) AT1G08290 267 / 2e-88 C2H2ZnF WIP3 WIP domain protein 3 (.1) AT1G13290 265 / 3e-88 C2H2ZnF WIP6, DOT5 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) AT1G34790 263 / 4e-87 C2H2ZnF WIP1, TT1 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G34370 101 / 2e-24 C2H2ZnF STOP1 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) AT5G22890 94 / 9e-22 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G03150 92 / 6e-21 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT1G55110 90 / 4e-20 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039613 [exp] 425 / 3e-151 AT3G57670 300 / 9e-101 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10031838 [exp] 294 / 2e-98 AT3G57670 386 / 4e-133 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10031271 [exp] 294 / 3e-98 AT3G57670 379 / 6e-131 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10004887 [exp] 286 / 3e-95 AT1G08290 357 / 9e-123 WIP domain protein 3 (.1) Lus10020597 [exp] 281 / 2e-93 AT1G08290 335 / 7e-114 WIP domain protein 3 (.1) Lus10020923 [exp] 275 / 6e-92 AT1G34790 312 / 2e-106 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10033454 [exp] 275 / 8e-92 AT1G34790 315 / 1e-107 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10035044 [exp] 275 / 8e-92 AT1G13290 338 / 1e-116 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Lus10021700 [exp] 275 / 9e-92 AT1G13290 333 / 2e-114 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G267900 [exp] 310 / 2e-105 AT3G57670 328 / 2e-111 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.009G062300 [exp] 298 / 8e-101 AT3G57670 336 / 3e-114 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.003G205000 [exp] 297 / 2e-100 AT3G57670 377 / 2e-130 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.016G052700 [exp] 296 / 2e-99 AT3G57670 389 / 7e-135 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.001G018900 [exp] 293 / 8e-99 AT1G51220 353 / 7e-122 WIP domain protein 5 (.1) Potri.009G143700 [exp] 290 / 1e-97 AT1G08290 364 / 7e-126 WIP domain protein 3 (.1) Potri.004G183900 [exp] 289 / 4e-97 AT1G08290 352 / 4e-121 WIP domain protein 3 (.1) Potri.010G129000 [exp] 280 / 1e-94 AT1G13290 352 / 1e-122 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Potri.002G098200 [exp] 271 / 8e-91 AT1G34790 311 / 3e-106 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.013G114600 [exp] 103 / 1e-24 AT1G34370 495 / 3e-172 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029525 pacid=23149402 polypeptide=Lus10029525 locus=Lus10029525.g ID=Lus10029525.BGIv1.0 annot-version=v1.0 ATGGCAGACCCTTCTGCCTCTGAAACTTCTGCTGCCGTTGGATGGTTCAATTTCTTCCCTCTCACTACCAACACTACAAAAGGAGCCTCATTATCATCAT CCATTGATCTTAATGGTCCTCCTCCTTCTACTCCGCTACTCATTGACTATTTCAGCCATGGCAAACAAAAGGAGCCTCGTTATCATCATCCTAATAGTAA TAGTACCATTTCTCTGCACATTGGTCCTCCTCCTCCTCCTAGTTGGGTTTCTTCTTCAACTTCTTCTTCCTCGTCTTCCTCTTCTTCTGCTAATAAAACA TGTAGCGGCAGTAACAACATCAATCGAGAAGATGCACATTTCTCATCTTTACTGGTAAACAAGAGTGAGCAATACTGGATTCCAACTCCAACCCAGATCC TCTTTGGTCCTTCTCAATTCTCCTGCCATCTCTGCTCCAAGTCCTTCAACCGTTACAACAACTTGCAGATGCATATGTGGGGGCACGGTTCACAGTACAG AAAAGGACCCGACTCCTTAAAAGGAAGCCAGCCAACCGCAATGCTGAGGCTCCCATGCTACTGCTGCGCAGCGGGGTGCAAGCACAACATAGATCACCCA AGGGCTAAAGCCTTGAAGGACTTCAGGACCCTCCAAACTCACTACAAGCGTAAGCACGGCATCAAGCCCTTCATGTGCAGGAAATGCGGGAAGCCCTTTG CAGTCAAAGGAGACTGGCGTACCCACGAGAAGAATTGTGGCCGCATCTGGTACTGCATTTGCGGCTCCGACTTCAAGCACAAGCGGTCGTTGAAAGATCA TGTCAAGTCCTTTGGCCACTCCAGCCGTGATCGAGAGGAGGATGAGGATGAGGACGAGCTCGACGGTGATCCTACGGTAAATATATAA
AA sequence Show only first row Show all	>Lus10029525 pacid=23149402 polypeptide=Lus10029525 locus=Lus10029525.g ID=Lus10029525.BGIv1.0 annot-version=v1.0 MADPSASETSAAVGWFNFFPLTTNTTKGASLSSSIDLNGPPPSTPLLIDYFSHGKQKEPRYHHPNSNSTISLHIGPPPPPSWVSSSTSSSSSSSSSANKT CSGSNNINREDAHFSSLLVNKSEQYWIPTPTQILFGPSQFSCHLCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGSQPTAMLRLPCYCCAAGCKHNIDHP RAKALKDFRTLQTHYKRKHGIKPFMCRKCGKPFAVKGDWRTHEKNCGRIWYCICGSDFKHKRSLKDHVKSFGHSSRDREEDEDEDELDGDPTVNI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Lus10029525 [exp]	0	1
AT1G67590			Remorin family protein (.1.2)		Lus10015817 [exp]	11.3	0.7814
AT3G58060			Cation efflux family protein (...		Lus10029304 [exp]	18.4	0.6873
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Lus10023297 [exp]	32.1	0.6992
AT4G23020			unknown protein		Lus10006336 [exp]	32.3	0.6990
AT2G16250			Leucine-rich repeat protein ki...		Lus10010823 [exp]	39.4	0.6733
AT1G13290	C2H2ZnF	WIP6, DOT5	WIP domain protein 6, DEFECTIV...		Lus10035044 [exp]	41.0	0.6537
AT1G16570			UDP-Glycosyltransferase superf...		Lus10031569 [exp]	45.3	0.6887
AT5G50090			unknown protein		Lus10042139 [exp]	46.3	0.6582
AT2G22600			RNA-binding KH domain-containi...		Lus10002662 [exp]	46.8	0.6747
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10009336 [exp]	64.6	0.6939

Compare expression of checked genes

Lus10029525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.