Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06240 71 / 5e-13 F-box family protein (.1) AT3G16210 69 / 7e-13 F-box family protein (.1) AT3G07870 68 / 2e-12 F-box and associated interaction domains-containing protein (.1) AT3G52320 63 / 9e-11 F-box and associated interaction domains-containing protein (.1) AT4G12560 57 / 7e-09 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT4G22390 57 / 1e-08 F-box associated ubiquitination effector family protein (.1) AT2G02030 56 / 2e-08 F-box family protein (.1) AT4G21240 56 / 3e-08 F-box and associated interaction domains-containing protein (.1) AT3G47150 55 / 5e-08 F-box and associated interaction domains-containing protein (.1) AT2G34280 54 / 7e-08 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031020 [exp] 293 / 2e-96 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10039593 [exp] 259 / 1e-85 AT4G12560 75 / 9e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10039614 [exp] 179 / 8e-52 AT5G09230 457 / 7e-161 sirtuin 2 (.1.2.3.4.5.6.7) Lus10019739 [exp] 135 / 6e-37 AT3G06240 53 / 5e-08 F-box family protein (.1) Lus10019738 [exp] 97 / 2e-23 ND / Lus10037892 [exp] 97 / 7e-22 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10038603 [exp] 95 / 5e-21 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10038606 [exp] 94 / 6e-21 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10026587 [exp] 86 / 7e-18 AT3G06240 104 / 3e-24 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262900 [exp] 121 / 7e-31 AT4G12560 107 / 5e-26 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G012200 [exp] 92 / 2e-20 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G099733 [exp] 91 / 4e-20 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.012G014300 [exp] 84 / 1e-17 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.006G013000 [exp] 84 / 2e-17 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G121200 [exp] 81 / 1e-16 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G207500 [exp] 81 / 1e-16 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G207401 [exp] 73 / 2e-15 AT3G07870 48 / 4e-07 F-box and associated interaction domains-containing protein (.1) Potri.008G006800 [exp] 77 / 3e-15 AT4G12560 100 / 4e-23 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G006900 [exp] 77 / 4e-15 AT4G12560 95 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10029527 pacid=23149411 polypeptide=Lus10029527 locus=Lus10029527.g ID=Lus10029527.BGIv1.0 annot-version=v1.0 ATGGTTGTTGAACCAACTGACCCAAGTCCAAGTCGAGGCCTTGACAGATTTCTCTTCACTATTTGGGCTTGGGCTAGTCCCCGATCGGCCCAGCTTTCAC CATCAGAGAGATTTCTCAAACAGTGTCAACCGTTTCTCTCTCTTTCTTCCTTCTCTTCCCCCAATTTCCACAGTGCAGAAGAAAGAGCAATGGCCAATCA TCCAGAAGATGTACTCGTGGACATCCTAGCGAGGTTGCCTGTCAAAGTTATCGTTAAATGCAGGTCCGTCTGCAAAACCTGGTACTCTCTCATCTCCACC AAAGCCTTCCAATCGTATAACCTCAATCATAAAGGGAACCCTAGCCTCATACTTTTGCACCATGGTGTCGAAAAGGATGAAAGAACCGAGCATTTCTGCT TGTGCGAGGATTTGGATGGTGATTTCCCTCCTACTCGTCTCCAGGAGTTCGATTCTCCCTTCAAATCTGCTCTTCACAATTATGGGGTAAGGATTGCTGG TTGTTGCAATGGCGTAGTTTGTTTCACTGACGGTTTAACCAAGAAGAATGGCAGAGCAGCTCTTCGGAATCCACAAATCAGAAAACTTGTTGAAATTCCT CTACCGATTAGAACTCTCTACTCAAAATCGGTGTGCACCTTGGGGTTTGGGTTTGATGCTCTGAATGATGACTACAAGTTGGTGAGAGTCTCTTCAACTG CATTCAAGGGTCATTACAAATTGAGGGACGACCATCTTGGTGTGCATCTTGATGGAATCTGTTATTGGCTAGCAACTAGACCAAACCCTGGCCAAAACAC CGTCAACAACGTAATTGTCTCGCTTTCGTTGAGCACTGAGACGTTGGAGGAAATGCCTATTCCAGTAGATGACTCAATGCTGGAATCCCATGTTGAACTT GCCAGTTGCTGCAAGGGCTCACTTTCTGTTGTGTTCTATGAGTATCAGGATGAATTGGGAATGGACCGTGCGACCATTTGGGTGAGGGAAGGAGGGTGTT GGATGAAGCTGACCACTGTGGAATCCTCTCACAAAATGAGTAAGATTGTTGCTTTCCAGGATAATGGCCTACTTTTGTTCACAGCCTTTGCTGGTTCCTT CCATGAAAAGGAGTGCCTGGTTCGGTATGCGCTGAAAAACAAGAGAGGAAGTGGAGTTGATGGTCGTGGAACAGCCGGAAACACTATATTTGGATGA
AA sequence Show only first row Show all	>Lus10029527 pacid=23149411 polypeptide=Lus10029527 locus=Lus10029527.g ID=Lus10029527.BGIv1.0 annot-version=v1.0 MVVEPTDPSPSRGLDRFLFTIWAWASPRSAQLSPSERFLKQCQPFLSLSSFSSPNFHSAEERAMANHPEDVLVDILARLPVKVIVKCRSVCKTWYSLIST KAFQSYNLNHKGNPSLILLHHGVEKDERTEHFCLCEDLDGDFPPTRLQEFDSPFKSALHNYGVRIAGCCNGVVCFTDGLTKKNGRAALRNPQIRKLVEIP LPIRTLYSKSVCTLGFGFDALNDDYKLVRVSSTAFKGHYKLRDDHLGVHLDGICYWLATRPNPGQNTVNNVIVSLSLSTETLEEMPIPVDDSMLESHVEL ASCCKGSLSVVFYEYQDELGMDRATIWVREGGCWMKLTTVESSHKMSKIVAFQDNGLLLFTAFAGSFHEKECLVRYALKNKRGSGVDGRGTAGNTIFG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07870			F-box and associated interacti...		Lus10029527 [exp]	0	1
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Lus10004118 [exp]	1.4	0.8878
					Lus10031452 [exp]	3.5	0.8707
AT5G05670			signal recognition particle bi...		Lus10013031 [exp]	5.5	0.8666
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10003785 [exp]	8.2	0.8258
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10036690 [exp]	10.4	0.8396
AT5G25800			Polynucleotidyl transferase, r...		Lus10018935 [exp]	11.0	0.8372
AT1G73350			unknown protein		Lus10026363 [exp]	12.6	0.8397
					Lus10018814 [exp]	14.1	0.8217
AT5G67390			unknown protein		Lus10011080 [exp]	15.2	0.8227
AT1G73350			unknown protein		Lus10042294 [exp]	15.7	0.8512

Compare expression of checked genes

Lus10029527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.