Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09230 503 / 1e-179 AtSRT2, SRT2 sirtuin 2 (.1.2.3.4.5.6.7) AT5G55760 89 / 3e-19 SRT1 sirtuin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039614 [exp] 527 / 0 AT5G09230 457 / 7e-161 sirtuin 2 (.1.2.3.4.5.6.7) Lus10016619 [exp] 83 / 3e-17 AT5G55760 682 / 0.0 sirtuin 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G068400 [exp] 494 / 1e-175 AT5G09230 487 / 4e-173 sirtuin 2 (.1.2.3.4.5.6.7) Potri.001G368100 [exp] 93 / 2e-20 AT5G55760 683 / 0.0 sirtuin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0085 [flax] [poplar] FAD_DHS PF02146 [flax] [poplar] SIR2 Sir2 family
Representative CDS sequence Show only first row Show all	>Lus10029531 pacid=23149445 polypeptide=Lus10029531 locus=Lus10029531.g ID=Lus10029531.BGIv1.0 annot-version=v1.0 ATGCTGCTGCGTCGCTCCCCTTGCTTCTCTGCTCTCTTGAATAACAATATGCACAGTGCAAAAAAGCTTCTGATTGGTTCACCCTTGGATTATGATCTTC CTGGTGCTCGCAAATGTTCCTCAAATCTTATTTCTTTCCAGGGATGCAATAGATTTATGAGAACTTCGTGCCGTATCACTGTCCCAGGGACCTCGTCTGC TGCTGTTGGGGAAAACCAGCAGCACCCACCTAACTTTTTGAGGAACAAGAAGACGGTTCCTGATTCTGAGCCTCCAACCACTCGAGATGTCAATCTTTTG TATCACTTCTTTGAACAAAGCACCAAGCTTATGGTCTTGACTGGAGCTGGAATGAGTACGGAGTGTGGAATTCCTGATTACAGAAGTCCAAATGGAGCTT ACAGTTCTGGATTCAAACCGATTACCCATCAGGAGTTCGTTCGTTTCGAACGGGCTCGCAGGAGATATTGGGCAAGAAGCTATGCCGGTTGGAGGCAGTT TACTGCTGCACAGCCTGGTGCTGCTCATTTTGCTTTAGCATCATTAGAGAAGGCTGGCAGAATAAATTTCATGGTCACACAAAATGTTGACAGACTGCAT CATCGTGCTGGGAGCAGCCCATTGGAAATACATGGTACTGTATATTCTGTGATTTGTCTAGACTGTGGCTTTTCCTTCAACCGAGAGTTATTTCAAGAAC AATTGAAGGACCTTAATCCAAAGTGGGCAGAAGCAATTGAAAGCTTGGATCGTAGGGTTCCCGGATCAGATAAGAGCTTTGGGATGAAACAGAGGCCTGA TGGTGATATCGAGATTGATGAGAAATTTTGGGAACAGGATTTCCATATTCCTACATGCCAGAAATGCAATGGAGTCCTCAAGCCTGATGTAGTTTTCTTT GGTGATAATGTACCAAAGGAAAGAGCAGAGAAAGCAATGACAGCAGCAAAAGGATGCGATGCATTTTTGGTCCTAGGATCATCTGTGATGACAATGTCAG CGTTCCGACTAGTCAAAGCGGCACATGAGGCAGGCGCTGGTACAGCAGTGGTGAACTTGGGTGTAACTCGAGCAGACGATATTGTGGCCTTGAAGATAAA TGCAAGATTAGGAGAGATTTTGATTCTCATCAATGTTGATGCCTGTTGCACAGATTTTGCCCAGAGTGCTTGA
AA sequence Show only first row Show all	>Lus10029531 pacid=23149445 polypeptide=Lus10029531 locus=Lus10029531.g ID=Lus10029531.BGIv1.0 annot-version=v1.0 MLLRRSPCFSALLNNNMHSAKKLLIGSPLDYDLPGARKCSSNLISFQGCNRFMRTSCRITVPGTSSAAVGENQQHPPNFLRNKKTVPDSEPPTTRDVNLL YHFFEQSTKLMVLTGAGMSTECGIPDYRSPNGAYSSGFKPITHQEFVRFERARRRYWARSYAGWRQFTAAQPGAAHFALASLEKAGRINFMVTQNVDRLH HRAGSSPLEIHGTVYSVICLDCGFSFNRELFQEQLKDLNPKWAEAIESLDRRVPGSDKSFGMKQRPDGDIEIDEKFWEQDFHIPTCQKCNGVLKPDVVFF GDNVPKERAEKAMTAAKGCDAFLVLGSSVMTMSAFRLVKAAHEAGAGTAVVNLGVTRADDIVALKINARLGEILILINVDACCTDFAQSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09230		AtSRT2, SRT2	sirtuin 2 (.1.2.3.4.5.6.7)		Lus10029531 [exp]	0	1
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Lus10032131 [exp]	2.2	0.9028
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10007094 [exp]	3.5	0.8509
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10017005 [exp]	6.3	0.8780
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10007734 [exp]	9.6	0.8147
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10019386 [exp]	10.0	0.8562
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10038110 [exp]	14.7	0.8380
AT5G35970			P-loop containing nucleoside t...		Lus10024975 [exp]	14.8	0.8356
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10005411 [exp]	16.4	0.8540
AT5G62680			Major facilitator superfamily ...		Lus10036669 [exp]	16.7	0.7761
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10036636 [exp]	16.7	0.8575

Compare expression of checked genes

Lus10029531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.