Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28605 241 / 5e-80 Photosystem II reaction center PsbP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039615 [exp] 424 / 2e-151 AT2G28605 226 / 7e-74 Photosystem II reaction center PsbP family protein (.1) Lus10038658 [exp] 169 / 3e-53 AT2G28605 116 / 1e-33 Photosystem II reaction center PsbP family protein (.1) Lus10009159 [exp] 129 / 2e-37 AT2G28605 98 / 3e-26 Photosystem II reaction center PsbP family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G100800 [exp] 263 / 2e-88 AT2G28605 266 / 2e-90 Photosystem II reaction center PsbP family protein (.1) Potri.005G068500 [exp] 165 / 2e-50 AT2G28605 173 / 4e-54 Photosystem II reaction center PsbP family protein (.1) Potri.010G210200 [exp] 48 / 2e-06 AT3G55330 299 / 2e-103 PsbP-like protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [flax] [poplar] Mog1p_PsbP PF01789 [flax] [poplar] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Lus10029532 pacid=23149379 polypeptide=Lus10029532 locus=Lus10029532.g ID=Lus10029532.BGIv1.0 annot-version=v1.0 ATGCTCGTGGGCATGGAGATTAGCTTCTCTGTCTTGAGCTGCCATCACCATTACCCGCCAAGGAAGAATTGCAAAACCCCTTTTTCTTCTCACAGGTTGA AACATTTATCATTATGGGCTTCAGCTACTTTACCCACCCAAAACAGCAATCAACCAGGAAGCACCAATAGATTGAGAGTGGGAGAAGCTACGCTTCCTTC TCCTCTAAGGAGAAAACTGAATCTCTCACTTATTGGATTGACCGTGGTTCTTAATGGGTACCGGTCAATCTCATCTAAGGCCGCCATTTTGGCTGAAGAA GAGTTGAAGCTTGAAAGATACACTGATTATCAAGAGGGCTTCACTCTGCTCAGGCCTGCTTCTTATTCCAAGGTGGATAAAGCTGGAGCAAATTTGCTGT TTGAGGAGATGAAGAAAGCAAGCAACAATGTTGGGGTTGTGGTGATCCCAGTTCGTCTTAAGAGCCTTGCTGAATTTGGGACTCCTCAATTTGTGGCAGA CAAGCTTATACAAGCCGAAAAGCGCAAGGAGAGTACGAAGGAGGCAGAGGTAATCGGGGCAACAGAAAGATCCGGAGGTGGAGGGCTACCGGTATACGAA TTTGAGTATAAAATTGACAGCACTAGAGGAGGGATTAAGAGGATCTTCTCAGCTGCATTTGTTTCAACTAAGAAGCTTTACCTCTTAAATATTGTTCATT CCGACAACCCAGAGAGTCCACTTGATGCTCCTAGTAGAATGATGTTAGAAGAAATTCTTCATTCCTTTGATGTGCAGTCACGTTGA
AA sequence Show only first row Show all	>Lus10029532 pacid=23149379 polypeptide=Lus10029532 locus=Lus10029532.g ID=Lus10029532.BGIv1.0 annot-version=v1.0 MLVGMEISFSVLSCHHHYPPRKNCKTPFSSHRLKHLSLWASATLPTQNSNQPGSTNRLRVGEATLPSPLRRKLNLSLIGLTVVLNGYRSISSKAAILAEE ELKLERYTDYQEGFTLLRPASYSKVDKAGANLLFEEMKKASNNVGVVVIPVRLKSLAEFGTPQFVADKLIQAEKRKESTKEAEVIGATERSGGGGLPVYE FEYKIDSTRGGIKRIFSAAFVSTKKLYLLNIVHSDNPESPLDAPSRMMLEEILHSFDVQSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28605			Photosystem II reaction center...		Lus10029532 [exp]	0	1
AT5G08050			Protein of unknown function (D...		Lus10040515 [exp]	3.3	0.9043
AT5G67390			unknown protein		Lus10019291 [exp]	8.0	0.8324
AT5G18660		PCB2, DVR	PALE-GREEN AND CHLOROPHYLL B R...		Lus10038638 [exp]	9.6	0.8787
AT4G10360			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10019130 [exp]	9.8	0.8146
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Lus10002040 [exp]	21.5	0.8702
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Lus10024330 [exp]	23.1	0.8557
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10024832 [exp]	24.2	0.8565
AT5G18660		PCB2, DVR	PALE-GREEN AND CHLOROPHYLL B R...		Lus10037912 [exp]	27.7	0.8444
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10029752 [exp]	30.1	0.8572
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10025007 [exp]	33.7	0.8543

Compare expression of checked genes

Lus10029532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.