Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52430 328 / 3e-104 PAD4, ATPAD4 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) AT3G48090 122 / 5e-29 ATEDS1, EDS1 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48080 118 / 2e-27 alpha/beta-Hydrolases superfamily protein (.1) AT5G14930 107 / 4e-24 GENE101, SAG101 senescence-associated gene 101 (.1.2.3) AT3G07400 48 / 2e-05 lipase class 3 family protein (.1) AT5G18640 44 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039617 [exp] 1050 / 0 AT3G52430 375 / 1e-122 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10042937 [exp] 163 / 1e-42 AT3G48090 416 / 2e-138 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) Lus10039444 [exp] 160 / 1e-40 AT3G01380 1238 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) Lus10009502 [exp] 142 / 2e-35 AT5G14930 299 / 5e-94 senescence-associated gene 101 (.1.2.3) Lus10011697 [exp] 135 / 2e-33 AT5G14930 255 / 4e-78 senescence-associated gene 101 (.1.2.3) Lus10014518 [exp] 132 / 3e-32 AT5G14930 298 / 2e-93 senescence-associated gene 101 (.1.2.3) Lus10032169 [exp] 126 / 4e-30 AT5G14930 314 / 7e-100 senescence-associated gene 101 (.1.2.3) Lus10039472 [exp] 124 / 6e-30 AT5G14930 223 / 1e-66 senescence-associated gene 101 (.1.2.3) Lus10036644 [exp] 113 / 1e-26 AT3G48090 275 / 2e-87 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G068700 [exp] 613 / 0 AT3G52430 327 / 2e-104 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.007G100600 [exp] 601 / 0 AT3G52430 320 / 4e-102 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.012G074700 [exp] 151 / 1e-38 AT3G48080 426 / 7e-142 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G007227 [exp] 151 / 1e-38 AT5G14930 300 / 3e-94 senescence-associated gene 101 (.1.2.3) Potri.019G005256 [exp] 150 / 2e-38 AT5G14930 317 / 3e-101 senescence-associated gene 101 (.1.2.3) Potri.015G069600 [exp] 142 / 1e-35 AT3G48090 424 / 2e-141 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G290600 [exp] 134 / 6e-33 AT5G14930 328 / 2e-105 senescence-associated gene 101 (.1.2.3) Potri.009G086100 [exp] 128 / 7e-31 AT5G14930 309 / 4e-98 senescence-associated gene 101 (.1.2.3) Potri.001G291033 [exp] 51 / 3e-07 AT5G14930 84 / 4e-19 senescence-associated gene 101 (.1.2.3) Potri.010G019500 [exp] 49 / 8e-06 AT5G18640 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10029534 pacid=23149373 polypeptide=Lus10029534 locus=Lus10029534.g ID=Lus10029534.BGIv1.0 annot-version=v1.0 ATGGGTCCTACTTCAAGACCCCCAAAATTAAAACCCGAAAAGGTTCGAGAGCAGCGAGATGATGGCCAACTTCTTAGCCTCCACGCCTCTTCTCCAAGAG TCGTGGCGGCTCTGCCAGATCGCCAACAACACCAGAAACAGCACCGGAAAGGTTACAGAAACAGCACAGGAGAGGTTAGTTTTGTGGCGGAGATTGGCGG AGGAGGAGTAGGGTACTTGGCGTTTTCGGGTGGGGGAATCCAGCCAGAGGCAGCGACGTCGGAGTACGGGAGATACGGGAAATTGGTGGGTCTGGAAGAG TGTTGCTGGGATGGATCAATAAGGAATATATTCTCTCCGATTTTGGCGGGTAATCGGGCGGAGGAAGAAGATGAGGATGAAGATGGAGAAGGAAGAGGGA AGAAGAAAGAAGGGGCTAATAATGCAAATGCTATGGTTCACGATGATTTGTTGCGAATCTTCTTGTCCATATATCACGACCCCTCCTTTCAATCCCAGAT ATCCGGACTAGTGCAGAAGTGCAAATCTATAGTGGTAACAGGGCATTCAGTGGGAGGAGCGATAGCATCTCTGTGTGCAATTCGGCTGCTTTCTTCTCTA GAATCCAACTCTTTTCTTCTTCACTCATCATCTTCTATCCTCTGCATCACTTTTGGATCTCCACTGCTAGGCAATGAGTCACTCTCGAGAGCCATTCTCG CCCAAAGATGGTCTGGAAACTTCTGCCACGTGGTATCCAACCACGACATCATGCCAAGGCTACTCTTTGTTCCAAACCTTGCTCCTGTCGCTCCTCAGCT TCATTCCCTCCTCCACTTCTGGCACCTCTCTTCTTTATCCTCTGCTGCCTCTGAATTCCTCCCTCTTAATCTCACACATGACTCCCAAAACATGCTTTTC CACCACGTCATCGCTTCATTACAGCTGCTTGTGGAATCTGGAGGAAGTAGTAGTTTGTATTGGCCATTTGGGAACTATTTCTTCTGCTCAGATGATGGAG GAGCCATATGTGTTGACAATGCTGCCTCTGTGGTTAGAATGATGTATCTGTTGTTGCTTGGGATGAATTCACTAAGTTGTAGCATTGAGAGCCACCTCAA GTATGGAGATGTTGTGGAGAAAGTTTGTTCTCAGTTTTTGACTAGTAAAAGTTTCTTACTTGGTGAGCTTCCTGAATCCAGCTATGAAGCTGGCCTTGCT TTGGCCTTGCAGTCCTCCGGGATCGACTTCCAGGGACCTAGTGCAAGATCAGGGAAAGAGTGCCTGAAGCTTGCCAAGAGAATGGGTCGGACTCCGAGCC TGAATTGTGCGAATCTAGCAATCAAGCTGTCGCAGGTAACACCTTACAGGGCTGAAATCGAATGGTACAAGGAATCCTGCGACAGGTCTGATGATCAGAT GGGGTACTATGATTCTTTCAAGCACAGAGGTGCTTCCAGGCGAGACGCCAAGATCAACATGAACCGACATAAGCTGGCCCGGTTTTGGGACAATGTGATT GAAATGCTGGAAACCAACCAGCTCCCTCATGACTTCCAGAAACGAGCTAAGTGGGTCAATGCTTCTCAGTTCTACAAGCTTCTGGTGGAGCCGCTGGACA TAGCTGAATACTACAGGACCGGGAAGCAGCGCGTGAAGGGCCACTACATTACATGTGGAAGGGAGAAGAGGTACCAAGTATTTGACAAATGGTGGAGAAC AGAGGGAATGGCTGTTAACCAACAAGACAACTTTGATATGAAGAGGAGCAAGTTTGCAAGTTTGACACAGGACACACTATTCTGGGGAAGAGTGGAGGAG GCCAGAGAATGGCTGGAGATTGCCAGGAGCGAAAGGGATCCAAGGAAAGTGTGCGAGCTATGGGAGAGACTCGATGGATTTGCGAGATATGCAGGAGGTT TGGTTGAAAGGAAGGAGGTTTCCAAAGACGTTAAGGCTAAAAATTCAAGCTATTGCTTGTGGGTGAAAGACTATCAAGAGGTGAAGTCACAAGTTGGTGC ACAATTGCTCGTTCAGTTCCCTAAGTTGATGGGTGGGGAGGTCGTCCCTTAA
AA sequence Show only first row Show all	>Lus10029534 pacid=23149373 polypeptide=Lus10029534 locus=Lus10029534.g ID=Lus10029534.BGIv1.0 annot-version=v1.0 MGPTSRPPKLKPEKVREQRDDGQLLSLHASSPRVVAALPDRQQHQKQHRKGYRNSTGEVSFVAEIGGGGVGYLAFSGGGIQPEAATSEYGRYGKLVGLEE CCWDGSIRNIFSPILAGNRAEEEDEDEDGEGRGKKKEGANNANAMVHDDLLRIFLSIYHDPSFQSQISGLVQKCKSIVVTGHSVGGAIASLCAIRLLSSL ESNSFLLHSSSSILCITFGSPLLGNESLSRAILAQRWSGNFCHVVSNHDIMPRLLFVPNLAPVAPQLHSLLHFWHLSSLSSAASEFLPLNLTHDSQNMLF HHVIASLQLLVESGGSSSLYWPFGNYFFCSDDGGAICVDNAASVVRMMYLLLLGMNSLSCSIESHLKYGDVVEKVCSQFLTSKSFLLGELPESSYEAGLA LALQSSGIDFQGPSARSGKECLKLAKRMGRTPSLNCANLAIKLSQVTPYRAEIEWYKESCDRSDDQMGYYDSFKHRGASRRDAKINMNRHKLARFWDNVI EMLETNQLPHDFQKRAKWVNASQFYKLLVEPLDIAEYYRTGKQRVKGHYITCGREKRYQVFDKWWRTEGMAVNQQDNFDMKRSKFASLTQDTLFWGRVEE AREWLEIARSERDPRKVCELWERLDGFARYAGGLVERKEVSKDVKAKNSSYCLWVKDYQEVKSQVGAQLLVQFPKLMGGEVVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Lus10029534 [exp]	0	1
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Lus10007818 [exp]	4.2	0.7683
AT3G20300			Protein of unknown function (D...		Lus10033919 [exp]	7.3	0.7406
AT1G56423			unknown protein		Lus10010918 [exp]	7.5	0.7812
AT1G29690		CAD1	constitutively activated cell ...		Lus10025235 [exp]	9.2	0.7870
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10009631 [exp]	9.7	0.7543
AT1G78620			Protein of unknown function DU...		Lus10038149 [exp]	11.0	0.7440
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10018323 [exp]	14.5	0.7481
AT2G19130			S-locus lectin protein kinase ...		Lus10004283 [exp]	17.9	0.7182
AT3G20300			Protein of unknown function (D...		Lus10024308 [exp]	23.5	0.7643
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Lus10040002 [exp]	25.7	0.7460

Compare expression of checked genes

Lus10029534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.