Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63860 591 / 0 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G12350 149 / 9e-39 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G53830 146 / 9e-39 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G19420 145 / 2e-37 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G27060 135 / 1e-35 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G55580 136 / 3e-35 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G76950 127 / 2e-31 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 127 / 4e-31 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 125 / 9e-31 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G08710 123 / 1e-30 RUG1 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039618 [exp] 719 / 0 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10009701 [exp] 143 / 1e-36 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036030 [exp] 141 / 9e-36 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036707 [exp] 132 / 2e-34 AT1G27060 375 / 1e-128 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10004700 [exp] 133 / 3e-34 AT3G55580 603 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10037219 [exp] 132 / 3e-34 AT1G27060 424 / 1e-147 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10035957 [exp] 131 / 7e-34 AT5G08710 504 / 1e-178 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10036737 [exp] 133 / 3e-33 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10037192 [exp] 132 / 8e-33 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G100200 [exp] 603 / 0 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.016G101700 [exp] 147 / 4e-39 AT3G53830 547 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.010G199100 [exp] 140 / 8e-37 AT3G55580 564 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.009G071800 [exp] 142 / 3e-36 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.008G059800 [exp] 135 / 8e-35 AT3G55580 566 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.001G276900 [exp] 135 / 6e-34 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.017G139600 [exp] 133 / 3e-33 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G080900 [exp] 131 / 2e-32 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.015G107000 [exp] 126 / 3e-32 AT1G27060 446 / 1e-156 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G101800 [exp] 125 / 6e-32 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10029536 pacid=23149387 polypeptide=Lus10029536 locus=Lus10029536.g ID=Lus10029536.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAGGGATCCGTTCAACTTGTCTCACCACCGGTTCATCACCACCGTGTACTCATCATCTCAGCCGGGGCCAGCCACTCCGTCGCTCTCCTCT CTGGGAATGTGGTATGCTCTTGGGGAAGAGGTGAAGATGGACAGTTGGGCCATGGAGATGCTGAGGATCGACTCTCACCCACCCAACTCAGTCGATTGGA TGGCCACCAGATTGTTTCCCTTACTTGTGGTGCTGATCATACAACTGCCTATTCCCTATCTCCTTCCGAGGTCTACAGTTGGGGATGGGGAGACTTTGGA CGGTTGGGTCATGGTAATTCTAGTGATTTATTCACTCCACAGCCTATCAAAGCATTGCAAGGTCTCAAGATCAGGCAAATTGCTTGCGGTGACAGCCATT GTCTAGCAGTTACAATGGACGGCGAGGTACAGAGCTGGGGGAGGAATCAAAATGGTCAACTCGGTCTTGGAACCATTGAAGACTCTCTCGTGCCTCAGAA AATTCAAGCTTTTCAGGGAATTCCAGTTAAAATGGTTGCTGCTGGTGCTGAGCATACTGCAGCTGTTACGGAAGATGGAGAGCTTTATGGATGGGGCTGG GGACGATATGGAAACTTGGGCCTCGGTGACAGAAATGATCGCTTAGTTCCTCAGAAAGTTTCTCTCGCTAATCTGCACGGAGAGAAGATGGTCATTGTTG CGTGCGGATGGAGGCATACAATTTCTGTTTCTTCTTCTGGAGGTTTATACAGCTACGGGTGGAGCAAATATGGTCAACTAGGACATGGAGACTTCAAGGA TCATCTCACTCCCCATAAACTGGAGGCCCTAGGTGCAAGTTTTATTACTCAGATATCAGGTGGCTGGAGACATTCTATGGCTGTCGCATCAGACGGAAAG TTATACGGTTGGGGATGGAATAAGTTTGGACAGGTTGGAGTTGGCGATAATGTTGACCACTGTTCTCCGGTACAATTGAAGTTCCCCCAGGATCAGTTAC TGATCGGCAAAATGTATTCTCTTGGGGAAGAGGGACCAATGGGCAGCTGGGTCATTGAGAGGCGATTGAAAGTTGTCCTTCTGCAACTAACTGATGTTTC TATGTCCCTGGATAGGAATTTACCGAAAATAGTAGAAGCGCTAAGCGCTGATGGATCTGGTCGTCAACAATTGCCATCATCTCTAGTTGATCCATCATCA GGGAAAATATGGGTGTCACCGTCAGCTAGATATGCTGTTGTTCCTGGTGAAGCAGGACAGGGAGCCGGCTCGACAGGTGGTAATGGGAACGAAGTAAGCG TTCCAGAGAATGACGTGAAAAGGTTGCGTGTTTAA
AA sequence Show only first row Show all	>Lus10029536 pacid=23149387 polypeptide=Lus10029536 locus=Lus10029536.g ID=Lus10029536.BGIv1.0 annot-version=v1.0 MEEEGSVQLVSPPVHHHRVLIISAGASHSVALLSGNVVCSWGRGEDGQLGHGDAEDRLSPTQLSRLDGHQIVSLTCGADHTTAYSLSPSEVYSWGWGDFG RLGHGNSSDLFTPQPIKALQGLKIRQIACGDSHCLAVTMDGEVQSWGRNQNGQLGLGTIEDSLVPQKIQAFQGIPVKMVAAGAEHTAAVTEDGELYGWGW GRYGNLGLGDRNDRLVPQKVSLANLHGEKMVIVACGWRHTISVSSSGGLYSYGWSKYGQLGHGDFKDHLTPHKLEALGASFITQISGGWRHSMAVASDGK LYGWGWNKFGQVGVGDNVDHCSPVQLKFPQDQLLIGKMYSLGEEGPMGSWVIERRLKVVLLQLTDVSMSLDRNLPKIVEALSADGSGRQQLPSSLVDPSS GKIWVSPSARYAVVPGEAGQGAGSTGGNGNEVSVPENDVKRLRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10029536 [exp]	0	1
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10039618 [exp]	1.0	0.9044
AT1G75060			unknown protein		Lus10018805 [exp]	2.4	0.8601
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Lus10005433 [exp]	4.5	0.8576
AT2G14520			CBS domain-containing protein ...		Lus10030665 [exp]	5.5	0.8544
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10033291 [exp]	9.5	0.8212
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Lus10040506 [exp]	10.4	0.8319
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10038305 [exp]	10.6	0.8591
AT5G42310			Pentatricopeptide repeat (PPR-...		Lus10012268 [exp]	14.6	0.8641
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10020413 [exp]	15.4	0.8215
AT4G29310			Protein of unknown function (D...		Lus10012933 [exp]	17.0	0.8084

Compare expression of checked genes

Lus10029536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.